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Principal Investigator, ICSI,
Berkeley.
Publications and Projects.
Detailed CV.
Research:
My research activities concern computational and statistical
approaches in biology. Specific areas of interest include:
- Developing tools for efficient and accurate discovery of the
genetic causes of common diseases.
- Studying the structure of human variation using computational tools.
- Biological sequence analysis.
- Algorithm design and analysis, applied to problems motivated from biology.
See a more comprehensive description of my research.
Selected Publications
- Sriram Sankararaman, Srinath Sridhar, Gad Kimmel and Eran
Halperin, Estimating Local Ancestry in Admixed Populations,
The American Journal of Human Genetics, Volume
82, Issue 2, 290-303, 2008.
- Noah Zaitlen, Hyun Min Kang, Eleazar Eskin, Eran Halperin,
Leveraging the HapMap Correlation Structure in Association Studies,
The American Journal of Human Genetics,
80:683-691, 2007.
- Kenneth B. Beckman, Kenneth A. Abel, Andreas Braun and Eran Halperin,
Using DNA Pools for Genotyping Trios, Nucleic Acids
Research, 2006; doi: 10.1093/nar/gkl700.
- David A. Hinds, Laura L. Stuve, Geoffrey B. Nilsen, Eran
Halperin, Eleazar Eskin, Dennis G. Ballinger, Kelly A. Frazer, David
R. Cox, Whole-Genome Patterns of Common DNA Variation in Three
Human Populations, Science, 18
February 2005: 1072-1079.
- Eran Halperin and Elad Hazan, HAPLOFREQ - Estimating
Haplotype Frequencies Efficiently, RECOMB, 2005: 553-568. Also in a special issue of
Journal of Computational Biology, 13 (2): 481-500, 2006.
- Eran Halperin and Eleazar Eskin,
Haplotype Reconstruction from Genotype Data using Imperfect
Phylogeny, Bioinformatics
20(12): 1842-1849 (2004).
- Julia Chuzhoy, Sudipto Guha, Eran Halperin, Sanjeev Khanna, Guy
Kortsarz, Robert Krauthgamer and Seffi Naor, Tight lower bounds
for the asymmetric k-center problem, Journal
of the ACM, 52(4):538-551, 2005.
- Eran Halperin, Improved approximation algorithms for the
vertex cover problem in graphs and hypergraphs, Siam Journal on Computing, 31, 1608-1623, (2002).
Current group members
- Bonnie Kirkpatrick
- Sriram Sankararaman
- Gad Kimmel
- Lucia Conde Lagoa
Former members
- Erno Lindfors (VTT, Findland, visiting 2006-2007)
- Srinath Sridhar (CMU, summer student, 2006).
- Carlos Santos (Universidad Rey Juan Carlos, Madrid,
Spain, visiting student, 2005-2006).
Activities:
- Program Committee, WABI, 2008.
- Program Committee, European Conference on Computational Biology (ECCB), 2008
- Reviewer for the NSF, BSF, ISF, 2007.
- Program Committee, the Third RECOMB Satellite Workshop on:
Computational Methods for SNPs and Haplotypes, 2006.
- Invited keynote speaker, Combinatorial Pattern Matching
(CPM), 2006.
- Program Committee, Computational Systems Biology (CSB), 2006.
- Panelist on an NIH study section, 2005.
- NSF panelist, 2005.
- Program Committee, Intelligent
Systems for Molecular Biology (ISMB), 2005.
- Program Committee, Intelligent
Systems for Molecular Biology (ISMB), 2004.
- Organizing committee, the
Second RECOMB Satellite Workshop on Computational Methods for
SNPs and Haplotypes, 2004.
News:
Education and employment:
- 2005-present: Senior Research Scientist, ICSI, Berkeley.
- 2003-2004: Research Associate, Princeton University, NJ.
- 2001-2003: Post-doc, UC Berkeley and ICSI, California.
Advisor: Richard Karp.
- 1997-2000: Research, Compugen LTD.
- 1997-2001: PhD, Tel-Aviv University, Israel.
Advisor: Uri Zwick.
- 1993-1996: M.Sc., Tel-Aviv University, Israel.
Advisor: Noga Alon.
Others:
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