Publications

Found 42 results
Author Title Type [ Year(Asc)]
Filters: Author is Roded Sharan  [Clear All Filters]
2010
Yosef N., Gramm J, Wang Q.-F., Noble W.S, Karp RM, Sharan R.  2010.  Prediction of Phenotype Information from Genotype Data. Communications in Information and Systems. 10(2):99-114.
Bruckner S, Hüffner F, Karp RM, Shamir R, Sharan R.  2010.  Topology-Free Querying of Protein Interaction Networks. Journal of Computational Biology. 17(3):237-252.
Bruckner S, Hüffner F, Karp RM, Shamir R, Sharan R.  2010.  Torque: Topology-Free Querying of Protein Interaction Networks. Journal of Computational Biology. 17(3):237-252.
2006
Scott J, Ideker TE, Karp RM, Sharan R.  2006.  Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks. Journal of Computational Biology. 13:133-144.
Eskin E, Halperin E, Sharan R.  2006.  A Note on Optimally Phasing Long Genomic Regions Using Local Haplotype Predictions. Journal of Bioinformatics and Computational Biology. 4(3):639-647.
2005
Sharan R, Sutharan S, Kelley RM, Kuhn T, McCuine S, Sittler T, Karp RM, Ideker TE.  2005.  Conserved Patterns of Protein Interaction in Multiple Species. Proceedings of National Academy of Science. 102(6):1974-1979.
Segal E, Sharan R.  2005.  A Discriminative Model for Identifying Spatial Cis-Regulatory Modules. Journal of Computational Biology.
Scott J, Ideker TE, Karp RM, Sharan R.  2005.  Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks. Proceedings of the 9th Annual International Conference on Research in Computational Molecular Biology (RECOMB'05). :133-144.
Sharan R, Ideker TE, Kelley BP, Shamir R, Karp RM.  2005.  Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Journal of Computational Biology. 12(6):835-846.
2004
Hartman T, Sharan R.  2004.  A 1.5-Approximation Algorithm for Sorting by Transpositions and Transversals.
Xing EP, Sharan R, Jordan MI.  2004.  Bayesian Haplotype Inference via the Dirichlet Process. Proceedings of the Second RECOMB Satellite Workshop on Computational Methods for SNP and Haplotypes. :99-112.
Xing EP, Sharan R, Jordan MI.  2004.  Bayesian Haplotype Inference via the Dirichlet Process. Proceedings of ICML 2004.
Shamir R, Sharan R, Tsur D..  2004.  Cluster Graph Modification Problems.
Gramm J, Nierhoff T, Sharan R, Tantau T.  2004.  On the Complexity of Haplotyping via Perfect Phylogeny. Proceedings of the Second RECOMB Satellite Workshop on Computational Methods for SNPs and Haplotypes. :35-46.
Kimmel G, Sharan R, Shamir R.  2004.  Computational Problems in Noisy SNP and Haplotype Analysis: Block Scores, Block Identification and Population Stratification. INFORMS Journal on Computing.
Sharan R, Ben-Hur A, Loots GG, Ovcharenko I.  2004.  CREME: Cis-Regulatory Module Explorer for the Human Genome. 32:W253-W256.
Segal E, Sharan R.  2004.  A Discriminative Model for Identifying Spatial Cis-Regulatory Modules. Proceedings of RECOMB 2004. :141-149.
Gramm J, Ben-Dor A, Sharan R.  2004.  Experimental Design for Multiplexed SNP Genotyping.
Sharan R, Ideker TE, Kelley BP, Shamir R, Karp RM.  2004.  Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Proceedings of the 8th Annual International Conference on Research in Computational Molecular Biology (RECOMB'04). :282-289.
Sharan R, Ideker TE, Kelley BP, Shamir R, Karp RM.  2004.  Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Proceedings of RECOMB 2004. :282-289.
Sharan R, Ideker TE, Kelley BP, Shamir R, Karp RM.  2004.  Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Proceedings of the 8th Annual International Conference on Research in Computational Molecular Biology (RECOMB'04). :282-289.
Pe'er I, Pupko T, Shamir R, Sharan R.  2004.  Incomplete Directed Perfect Phylogeny. SIAM Journal on Computing. 33(3):590-607.

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