Publications

Found 42 results
Author Title Type [ Year(Desc)]
Filters: Author is Roded Sharan  [Clear All Filters]
2003
Sharan, R., Maron-Katz A., & Shamir R. (2003).  CLICK and EXPANDER: A System for Clustering and Visualizing Gene Expression Data. Bioinformatics. 1787-1799.
Kelley, B. P., Sharan R., Karp R. M., Sittler T., Root D. E., Stockwell B. R., et al. (2003).  Conserved Pathways Within Bacteria and Yeast as Revealed by Global Protein Network Alignment. Proceedings of the National Academy of Sciences of the United States of America. 100(20), 11394-11399.
Sharan, R., Ovcharenko I., Ben-Hur A., & Karp R. M. (2003).  CRÈME: A Framework for Identifying Cis-Regulatory Modules in Human-Mouse Conserved Segments. Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology (ISMB'03). 1283-1291.
Pupko, T., Sharan R., Hasegawa M.., Shamir R., & Graur D.. (2003).  Detecting Excess Radical Replacements in Phylogenetic Trees. Gene. 127-135.
Segal, E., & Sharan R. (2003).  A Discriminative Model for Identifying Spatial cis-Regulatory Modules.
Elkon, R.., Linhart C.., Sharan R., Shamir R., & Shiloh Y.. (2003).  Genome-Wide In-silico Determination of Transcriptional Regulation Modules Controlling Cell Cycle in Human Cells. Genome Research. 773-780.
Sharan, R., Ideker T. E., Kelley B. P., Shamir R., & Karp R. M. (2003).  Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data.
Kimmel, G., Sharan R., & Shamir R. (2003).  Idetifying Blocks and Sub-Populations in Noisy SNP Data. Proceedings of the Third Workshop on Algorithms in Bioinformatics (WABI'03). 303-319.
Gat-Viks, I., Sharan R., & Shamir R. (2003).  Scoring Clustering Solutions by Their Biological Relevance. Bioinformatics. 2381-2389.
Ben-Dor, A., Hartman T., Schwikowski B., Sharan R., & Yakhini Z. (2003).  Towards Optimally Multiplexed Applications of Universal DNA Tag Systems. Proceedings of the Seventh Annual International Conference on Research in Computational Molecular Biology (RECOMB'03).
2004
Hartman, T., & Sharan R. (2004).  A 1.5-Approximation Algorithm for Sorting by Transpositions and Transversals.
Xing, E. P., Sharan R., & Jordan M. I. (2004).  Bayesian Haplotype Inference via the Dirichlet Process. Proceedings of the Second RECOMB Satellite Workshop on Computational Methods for SNP and Haplotypes. 99-112.
Xing, E. P., Sharan R., & Jordan M. I. (2004).  Bayesian Haplotype Inference via the Dirichlet Process. Proceedings of ICML 2004.
Shamir, R., Sharan R., & Tsur D.. (2004).  Cluster Graph Modification Problems.
Gramm, J., Nierhoff T., Sharan R., & Tantau T. (2004).  On the Complexity of Haplotyping via Perfect Phylogeny. Proceedings of the Second RECOMB Satellite Workshop on Computational Methods for SNPs and Haplotypes. 35-46.
Kimmel, G., Sharan R., & Shamir R. (2004).  Computational Problems in Noisy SNP and Haplotype Analysis: Block Scores, Block Identification and Population Stratification. INFORMS Journal on Computing.
Sharan, R., Ben-Hur A., Loots G. G., & Ovcharenko I. (2004).  CREME: Cis-Regulatory Module Explorer for the Human Genome. 32, W253-W256.
Segal, E., & Sharan R. (2004).  A Discriminative Model for Identifying Spatial Cis-Regulatory Modules. Proceedings of RECOMB 2004. 141-149.
Gramm, J., Ben-Dor A., & Sharan R. (2004).  Experimental Design for Multiplexed SNP Genotyping.
Sharan, R., Ideker T. E., Kelley B. P., Shamir R., & Karp R. M. (2004).  Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Proceedings of the 8th Annual International Conference on Research in Computational Molecular Biology (RECOMB'04). 282-289.
Sharan, R., Ideker T. E., Kelley B. P., Shamir R., & Karp R. M. (2004).  Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Proceedings of the 8th Annual International Conference on Research in Computational Molecular Biology (RECOMB'04). 282-289.
Sharan, R., Ideker T. E., Kelley B. P., Shamir R., & Karp R. M. (2004).  Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Proceedings of RECOMB 2004. 282-289.
Pe'er, I., Pupko T., Shamir R., & Sharan R. (2004).  Incomplete Directed Perfect Phylogeny. SIAM Journal on Computing. 33(3), 590-607.
Sharan, R., Ben-Dor A., & Yakhini Z. (2004).  Multiplexing Schemes for Generic SNP Genotyping Assays. Proceedings of PSB'04. 140-151.
Shamir, R., & Sharan R. (2004).  Optimal Fully Dynamic Algorithms for Cograph Recognition. 329-340.

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