Publications
Using Contiguous Bi-Clustering for Data Driven Temporal Analysis of fMRI Based Functional Connectivity. Proceedings of the 4th Annual INCF Neuroinformatics Congress.
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2011. Topology-Free Querying of Protein Interaction Networks. Journal of Computational Biology. 17(3):237-252.
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2010. Torque: Topology-Free Querying of Protein Interaction Networks. Journal of Computational Biology. 17(3):237-252.
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2010. Increasing the Power of Association Studies by Imputation-Based Sparse Tag SNP Selection. Communications in Information and Systems. 9(3):269-282.
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2009. Torque: Topology-Free Querying of Protein Interaction Networks. Nucleic Acids Research. 37:106-108.
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2009. Detecting Disease-Specific Dysregulated Pathways Via Analysis of Clinical Expression Profiles. Proceedings of 12th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2008). :347-359.
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2008. A Randomization Test for Controlling Population Stratification in Whole-Genome Association Studies. American Journal of Human Genetics. 81(5):895-905.
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2007. Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Journal of Computational Biology. 12(6):835-846.
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2005. Tag SNP Selection in Genotype Data for Maximizing SNP Prediction Accuracy. Proceedings of the 13th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2005). :195-203.
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Computational Problems in Noisy SNP and Haplotype Analysis: Block Scores, Block Identification and Population Stratification. INFORMS Journal on Computing.
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2004. Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Proceedings of RECOMB 2004. :282-289.
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2004. Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Proceedings of the 8th Annual International Conference on Research in Computational Molecular Biology (RECOMB'04). :282-289.
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2004. Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Proceedings of the 8th Annual International Conference on Research in Computational Molecular Biology (RECOMB'04). :282-289.
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2004. Incomplete Directed Perfect Phylogeny. SIAM Journal on Computing. 33(3):590-607.
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2004. Reconstructing Chain Functions in Genetic Networks. Proceedings of the Ninth Pacific Symposium on Biocomputing (PSB'04). :498-509.
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2004. Revealing Modularity and Organization in the Yeast Molecular Network by Integrated Analysis of Highly Heterogeneous Genome-Wide Data. Proceedings of the National Academy of Sciences of the United States of America. 101(9):2981-2986.
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2004. CLICK and EXPANDER: A System for Clustering and Visualizing Gene Expression Data. Bioinformatics. :1787-1799.
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2003. Detecting Excess Radical Replacements in Phylogenetic Trees. Gene. :127-135.
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2003. Genome-Wide In-silico Determination of Transcriptional Regulation Modules Controlling Cell Cycle in Human Cells. Genome Research. :773-780.
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