Publications

Found 33 results
Author Title Type [ Year(Asc)]
Filters: Author is Ron Shamir  [Clear All Filters]
2014
Rozov, R., Shamir R., & Halperin E. (2014).  Fast Lossless Compression via Cascading Bloom Filters. 15,
2012
Rozov, R., Halperin E., & Shamir R. (2012).  MGMR: Leveraging RNA-Seq Population Data to Optimize Expression Estimation. 13,
2011
Maron-Katz, A., Ben Simon E., Jacob Y., Rosenberg K., Karp R. M., Hendler T., et al. (2011).  Using Contiguous Bi-Clustering for Data Driven Temporal Analysis of fMRI Based Functional Connectivity. Proceedings of the 4th Annual INCF Neuroinformatics Congress.
2010
Bruckner, S., Hüffner F., Karp R. M., Shamir R., & Sharan R. (2010).  Topology-Free Querying of Protein Interaction Networks. Journal of Computational Biology. 17(3), 237-252.
Bruckner, S., Hüffner F., Karp R. M., Shamir R., & Sharan R. (2010).  Torque: Topology-Free Querying of Protein Interaction Networks. Journal of Computational Biology. 17(3), 237-252.
2009
Davidovich, O.., Kimmel G., Halperin E., & Shamir R. (2009).  Increasing the Power of Association Studies by Imputation-Based Sparse Tag SNP Selection. Communications in Information and Systems. 9(3), 269-282.
Bruckner, S., Hüffner F., Karp R. M., Shamir R., & Sharan R. (2009).  Torque: Topology-Free Querying of Protein Interaction Networks. 74-89.
Bruckner, S., Hüffner F., Karp R. M., Shamir R., & Sharan R. (2009).  Torque: Topology-Free Querying of Protein Interaction Networks. Nucleic Acids Research. 37, 106-108.
2008
Ulitzky, I.., Karp R. M., & Shamir R. (2008).  Detecting Disease-Specific Dysregulated Pathways Via Analysis of Clinical Expression Profiles. Proceedings of 12th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2008). 347-359.
2007
Kimmel, G., Jordan M. I., Halperin E., Shamir R., & Karp R. M. (2007).  A Randomization Test for Controlling Population Stratification in Whole-Genome Association Studies. American Journal of Human Genetics. 81(5), 895-905.
2005
Sharan, R., Ideker T. E., Kelley B. P., Shamir R., & Karp R. M. (2005).  Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Journal of Computational Biology. 12(6), 835-846.
Halperin, E., Kimmel G., & Shamir R. (2005).  Tag SNP Selection in Genotype Data for Maximizing SNP Prediction Accuracy. Proceedings of the 13th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2005). 195-203.
2004
Shamir, R., Sharan R., & Tsur D.. (2004).  Cluster Graph Modification Problems.
Kimmel, G., Sharan R., & Shamir R. (2004).  Computational Problems in Noisy SNP and Haplotype Analysis: Block Scores, Block Identification and Population Stratification. INFORMS Journal on Computing.
Sharan, R., Ideker T. E., Kelley B. P., Shamir R., & Karp R. M. (2004).  Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Proceedings of the 8th Annual International Conference on Research in Computational Molecular Biology (RECOMB'04). 282-289.
Sharan, R., Ideker T. E., Kelley B. P., Shamir R., & Karp R. M. (2004).  Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Proceedings of the 8th Annual International Conference on Research in Computational Molecular Biology (RECOMB'04). 282-289.
Sharan, R., Ideker T. E., Kelley B. P., Shamir R., & Karp R. M. (2004).  Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Proceedings of RECOMB 2004. 282-289.
Pe'er, I., Pupko T., Shamir R., & Sharan R. (2004).  Incomplete Directed Perfect Phylogeny. SIAM Journal on Computing. 33(3), 590-607.
Shamir, R., & Sharan R. (2004).  Optimal Fully Dynamic Algorithms for Cograph Recognition. 329-340.
Gat-Viks, I., Shamir R., Karp R. M., & Sharan R. (2004).  Reconstructing Chain Functions in Genetic Networks. Proceedings of the Ninth Pacific Symposium on Biocomputing (PSB'04). 498-509.
Tanay, A., Sharan R., Kupiec M., & Shamir R. (2004).  Revealing Modularity and Organization in the Yeast Molecular Network by Integrated Analysis of Highly Heterogeneous Genome-Wide Data. Proceedings of the National Academy of Sciences of the United States of America. 101(9), 2981-2986.
2003
Sharan, R., Maron-Katz A., & Shamir R. (2003).  CLICK and EXPANDER: A System for Clustering and Visualizing Gene Expression Data. Bioinformatics. 1787-1799.
Pupko, T., Sharan R., Hasegawa M.., Shamir R., & Graur D.. (2003).  Detecting Excess Radical Replacements in Phylogenetic Trees. Gene. 127-135.
Elkon, R.., Linhart C.., Sharan R., Shamir R., & Shiloh Y.. (2003).  Genome-Wide In-silico Determination of Transcriptional Regulation Modules Controlling Cell Cycle in Human Cells. Genome Research. 773-780.
Sharan, R., Ideker T. E., Kelley B. P., Shamir R., & Karp R. M. (2003).  Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data.

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