Publication Search Results

Title	Author	Bibliographic	Date	Group	Links
Selfish Behavior and Stability of the Internet: A Game-Theoretic Analysis of TCP	A. Akella, R.M. Karp, S. Seshan, S. Shenker, and C. Papadimitriou.	Proceedings ACM SIGCOMM 2002.	2002	Algorithms
Discovering Local Structure in Gene Expression Data: The Order-Preserving Submatrix Problem	A. Ben-Dor, B. Chor, R. M. Karp, and Z. Yakhini	Journal of Computational Biology, Vol. 10, No. 3-4, pp. 385-398	2003	Algorithms
Discovering Local Structure in Gene Expression Data: The Order Preserving Submatrix Problem	A. Ben-Dor, B. Chor, R.M. Karp, and Z. Yakhini	Proceedings of the Sixth Annual International Conference on Research in Computational Molecular Biology (RECOMB'02)	2002	Algorithms
Universal DNA Tag Systems: A Combinatorial Design Scheme	A. Ben-Dor, R. Karp, B. Schwikowski, and Z. Yakhini	Proceedings of RECOMB 2000.	2000	Algorithms
The Restriction Scaffold Problem	A. Ben-Dor, R.M. Karp, B Schwikowski, and R. Shamir	Proceedings of the Sixth Annual International Conference on Research in Computational Molecular Biology (RECOMB'02), 2002.	2002	Algorithms
The Restriction Scaffold Problem	A. Ben-Dor, R.M. Karp, B. Schwikowski, and R. Shamir	Journal of Computational Biology, Vol. 10, No. 3-4, pp. 385-398	2003	Algorithms
Towards Optimally Multiplexed Applications of Universal DNA Tag Systems	A. Ben-Dor, T. Hartman, B. Schwikowski, R. Sharan, and Z. Yakhini	Proceedings of the Seventh Annual International Conference on Research in Computational Molecular Biology (RECOMB'03), ACM Press, 48-56	2003	Algorithms
Towards Optimally Multiplexed Applications of Universal Arrays	A. Ben-Dor, T. Hartman, R. M. Karp, B. Schwikowski, R. Sharan, and Z. Yakhini	Journal of Computational Biology, Vol. 11, Nos. 2-3, pp. 477-493	January 2004	Algorithms	[PDF]
Branch and Infer: A Unifying Framework for Integer and Nite Domain Constraint Programming	A. Bockmayr and T. Kasper	INFORMS Journal on Computing, 10(3): 287-300, 1998.	1998	Algorithms
Spontaneous Development of Modularity in Simple Cortical Models	A. Chernjavsky and J. Moody	Neural Computation, Vol. 2, Issue 3, pp. 334-354	1990	Algorithms
Note on Development of Modularity in Simple Cortical Models	A. Chernjavsky and J. Moody	Advances in Neural Information Processing Systems, Vol. 2, D. Touretzky, ed., Morgan Kaufmann, Palo Alto	1990	Algorithms
A Heuristic for the Stacker Crane Problem on Trees Which is Almost Surely Exact	A. Coja-Oghlan, S.O. Krumke, and T. Nierhoff	Algorithms and Computation, 14th International Sympsium, ISAAC 2003, LNCS 2906, pp. 605-614, Springer	2003	Algorithms
Algorithms for Graph Partitioning on the Planted Partition Model. (Randomization, Approximation, and Combinatorial Optimization. Algorithms and Techniques.)	A. Condon and R.M. Karp	Edited by: Hochbaum, D., Jansen, K., Rolim, J.D.P., Sinclair, A. Berlin, Germany: Springer-Verlag, 1999. pp. 221-32, ix+287 pp. 14	1999	Algorithms
Challenges for Theory of Computing	A. Condon, H. Edelsbrunner, E.A. Emerson, L. Fortnow, et.al.	SIGACT News, June 1999, vol.30, (no.2):62-76.	June 1999	Algorithms
Adaptive Concept Drift Detection	A. Dries and U. Rueckert	Best paper, proceedings of the 9th SIAM International Conference on Data Mining, Sparks, Nevada, pp. 235-246	April 2009	Algorithms	[PDF]
Haplotype Reconstruction Using Perfect Phylogeny and Sequence Data	A. Efros and E. Halperin	Proceedings of the Second Annual Satellite Workshop on Massively Parallel Sequencing at the 16th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2012), Barcelona, Spain. Published in BMC Bioinformatics, Vol. 13, Suppl. 6:S2	April 2012	Algorithms	[PDF]
Competitive paging algorithms	A. Fiat, R. M. Karp, M. Luby, L.A. McGeoch, D.D. Sleator, and N.E. Young	Journal of Algorithms, Vol. 12, No. 4, pp. 685-99	December 1991	Algorithms
When is the assignment bound tight for the asymmetric traveling-salesman problem?	A. Frieze, R. M. Karp, and B. Reed	SIAM Journal on Computing, Vol. 24, No. 3, pp. 484-93	June 1995	Algorithms
Genotype Is a Stronger Determinant than Sex of the Mouse Gut Microbiota	A. Kovacs, N. Ben-Jacob, H. Tayem, E. Halperin, F. A. Iraqi, and U. Gophna	Microbial Ecology, Vol. 61, No. 2, pp. 423-428	February 2011	Algorithms
Using Contiguous Bi-Clustering for Data Driven Temporal Analysis of fMRI Based Functional Connectivity	A. Maron-Katz, E. B. Simon, Y. Jacob, K. Rosenberg, R. M. Karp, T. Hendler, and R. Shamir	Proceedings of the 4th Annual INCF Neuroinformatics Congress, Boston, Massachusetts	September 2011	Algorithms	[PDF]
Discrete Prediction Games with Arbitrary Feedback and Loss	A. Piccolboni and C. Schindelhauer	Universitat zu Lubeck Technical Report No. AIIM-TR-A-00-18	November 2000	Algorithms
A Practical Computer Immunology Approach for Self-Protection Enhanced by Optimization Techniques	A. Pietzowski, B. Satzger, W. Trumler, and T. Ungerer	Journal of Autonomic and Trusted Computing	2010	Algorithms
Load Balancing in Structured P2P Systems	A. Rao, K. Lakshminarayanan, S. Surana, R.M. Karp, and I. Stoica	Second International Workshop on Peer-to-Peer Systems	2003	Algorithms
Decision Technologies for Computational Finance, Proceedings of the London Conference	A. Refenes, N. Burgess, and J. Moody, editors.	Kluwer Financial Publishing, The Netherlands, 1998.	1998	Algorithms
On Approximating Optimal Auctions	A. Ronen	The Third ACM Conference on Electronic Commerce (EC01), 11-17, 2001.	2001	Algorithms
Dynamic Portfolio Management with Transaction Costs	A. Suarez, J. Moody, and M. Saffell	Proceedings of the International Workshop on Advances in Machine Learning for Computational Finance, London, United Kingdom. Also presented at the Multidisciplinary Symposium on Reinforcement Learning, Montreal, Canada, June 2009	July 2009	Algorithms	[PDF]
Revealing Modularity and Organization in the Yeast Molecular Network by Integrated Analysis of Highly Heterogeneous Genome-Wide Data	A. Tanay, R. Sharan, M. Kupiec, and R. Shamir	Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 9, pp. 2981-2986. DOI:10.1073/pnas.0308661100.	March 2004	Algorithms	[PDF]
Acceleration of DBSCAN-Based Clustering with Reduced Neighborhood Evaluations	A. Thom and O. Kramer	Proceedings of the 33rd Annual German Conference on AI: Advances in Artificial Intelligence (KI 2010), Kralsruhe, Germany, pp. 195-202	September 2010	Algorithms
Probabilistic Inference of Viral Quasispecies Subject to Recombination	A. Topfer, O. Zagordi, S. Prabhakaran, V. Roth, E. Halperin, and N. Beerenwinkel	Journal of Computational Biology, Vol. 20, No. 2, pp. 113-123	February 2013	Algorithms
Fast Pruning Using Principal Components	A.U. Levin, T.K. Leen, and J.E. Moody	Advances in Neural Information Processing Systems, Vol. 6, Cowan, Tesauro, and Alspector (eds), Morgan Kaufmann Publishers, San Mateo, California	1994	Algorithms
Emerging Opportunities for Theoretical Computer Science	A.V. Aho, D.S. Johnson, R.M. Karp, S.R. Kosaraju, and others	SIGACT News, Sept. 1997, vol.28, (no.3):65-74.	1997	Algorithms
Quasirandom Rumor Spreading: Expanders, Push vs. Pull, and Robustness	B. Doerr, T. Friedrich, and T. Sauerwald	Proceedings of the 36th International Colloquium on Automata, Languages, and Programming (ICALP 2009), Rhodes, Greece, pp. 366-377	July 2009	Algorithms	[PDF]
Quasirandom Rumor Spreading: An Experimental Analysis	B. Doerr, T. Friedrich, M. Künneman, and T. Sauerwald	Proceedings of the Workshop on Algorithm Engineering and Experiments (ALENEX09), New York, New York, pp. 145-153	January 2009	Algorithms	[PDF]
Optimizing Monotone Functions Can Be DifficultOptimizing Monotone Functions Can Be Difficult	B. Doerr, T. Jansen, D. Sudholt, C. Winzen, and C. Zarges	Proceedings of the 11th International Conference on Parallel Problem Solving from Nature (PPSN 2010), Krakow, Poland, pp. 42-51	September 2010	Algorithms
Load Balancing in Dynamic Structured P2P Systems	B. Godfrey, R.M. Karp, K. Lakshminarayanan, S. Surana, and I. Stoica	Proceedings of INFOCOMM	January 05 2004	Algorithms
Haplotypes versus Genotypes on Pedigrees	B. Kirkpatrick	Proceedings of the 10th Workshop on Algorithms in Bioinformatics (WABI 2010), Liverpool, United Kingdom, pp. 136-147	September 2010	Algorithms	[PDF]
HAPLOPOOL: Improving Haplotype Frequency Estimation Through DNA Pools and Phylogenetic Modeling	B. Kirkpatrick, C. Santos Armendariz, R. M. Karp, and E. Halperin	Bioinformatics, Vol. 23, No. 22, pp. 3048-3055	November 2007	Algorithms	[PDF]
Haplotype Inference in Complex Pedigrees	B. Kirkpatrick, E. Halperin, and R. M. Karp	Journal of Computational Biology, Vol. 17, No. 3, pp. 269-280	March 2010	Algorithms
Algorithms for Comparing Pedigree Graphs	B. Kirkpatrick, H. Finucane, Y. Reshef, and R. Karp	Presented at the 10th Workshop on Algorithms in Bioinformatics (WABI 2010), Liverpool, United Kingdom	September 2010	Algorithms	[PDF]
Haplotype Inference in Complex Pedigrees	B. Kirkpatrick, J. Rosa, E. Halperin, and R. M. Karp	Proceedings of the 13th Annual International Conference on Research in Computational Molecular Biology (RECOMB2009), Tucson, Arizona, pp. 108-120	May 2009	Algorithms	[PDF]
Pedigree Reconstruction Using Identity by Descent	B. Kirkpatrick, S. C. Li, R. M. Karp, and E. Halperin	Proceedings of the 15th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2011),Vancouver, British Columbia, Canada, pp. 136-152. Also appeared in Journal of Computational Biology, Vol. 18, No. 11, pp. 1481-1493, November 2011.	March 2011	Algorithms	[PDF]
Comparing Pedigree Graphs	B. Kirkpatrick, Y. Reshef, H. Finucane, H. Jiang, B. Zhu, and R. M. Karp	Journal of Computational Biology	2012	Algorithms	[PDF]
Conserved Pathways Within Bacteria and Yeast as Revealed by Global Protein Network Alignment	B. P. Kelley, R. Sharan, R. M. Karp, E.T. Sittler, D. E. Root, B. R. Stockwell, and T. Ideker	Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 20, pp. 11394-11399. DOI:10.1073/pnas.1534710100.	September 2003	Algorithms	[PDF]
Presymptomatic Risk Assessment for Chronic Non-Communicable Diseases	B. Padhukasahasram, E. Halperin, J. Wessel, D. J. Thomas, E. Silver, H. Trumbower, M. Cargill, and D. A. Stephan	PLoS ONE Vol. 5, No. 12. doi:10.1371/journal.pone.0014338	December 2010	Algorithms
Imputation-Based Local Ancestry Inference in Admixed Populations	B. Pasaniuc, J. Kennedy, and I. I. Mandoiu	Proceedings of the Fifth International Symposium on Bioinformatics Research and Applications (ISBRA 2009), Fort Lauderdale, Florida, pp. 221-233	May 2009	Algorithms	[PDF]
Accurate Estimation of Expression Levels of Homologous Genes in RNA-Seq Experiments	B. Pasaniuc, N. Zaitlen, and E. Halperin	Proceedings of the Fourteenth International Conference on Research in Computational Biology (RECOMB 2010), Lisbon, Portugal, pp. 397-409. Also appears in Journal of Computational Biology (a special issue of RECOMB), Vol. 18, Issue 3, pp. 489-468, March 2011.	April 2010	Algorithms	[PDF]
Inference of Locus-Specific Ancestry in Closely Related Populations	B. Pasaniuc, S. Sankararaman, G. Kimmel, and E. Halperin	Proceedings of the 17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) and the 8th European Conference on Computational Biology (ECCB), Stockholm, Sweden. In Bioinformatics, Vol. 25, No. 12, pp. 213-221	June 2009	Algorithms	[PDF]
A Generic Coalescent-Based Framework for the Selection of a Reference Panel for Imputation	B. Pasanuic, R. Avinery, T. Gur, C. F. Skibola, P. M. Bracci, and E. Halperin	Genetic Epidemiology, Vol. 34, Issue 8, pp. 773-782	December 2010	Algorithms	[PDF]
An information entropy approach to the small-lot concept	B. Ronen and R. M. Karp	IEEE Transactions on Engineering Management, Vol. 41, No. 1, p. 89-92	February 1994	Algorithms
Autonomous and Scalable Failure Detection in Distributed Systems	B. Satzger, A. Pietzowski, and T. Ungerer	International Journal of Autonomous and Adaptive Communications Systems, Vol. 4, No.1, pp. 61-77	January 2011	Algorithms

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