Publication Search Results

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Whole-Genome Patterns of Common DNA Variation in Three Human PopulationsD. A. Hinds, L. L. Stuve, G. B. Nilsen, E. Halperin, E. Eskin, D. G. Ballinger, K. A. Frazer, and D. R. CoxScience, Vol. 307, No. 5712, pp. 1072-1079. DOI:10.1126/science.1105436February 2005Algorithms[PDF]

When to Use Bit-Wise NeutralityT. Friedrich and F. NeumannNatural Computing, Vol. 9, No. 1, pp. 283-294March 2010Algorithms[PDF]

When is the assignment bound tight for the asymmetric traveling-salesman problem?A. Frieze, R. M. Karp, and B. ReedSIAM Journal on Computing, Vol. 24, No. 3, pp. 484-93June 1995Algorithms
What is the True Price? -- State Space Models for High Frequency FX RatesJ. Moody and L. WuDecision Technologies for Financial Engineering, Y. Abu-Mostafa, A. N. Refenes, and A. S. Weigend, eds., World Scientific, London, 1997. 1997Algorithms
Weight-Space Probability Densities and Equilibria in Stochastic LearningT.K. Leen and J. MoodyAdvances in Neural Information Processing Systems 5, Hanson, Cowan, and Giles (eds), Morgan Kaufmann Publishers, San Mateo, California 1993Algorithms
Variations on the Theme of "Twenty Questions"R.M. KarpProceedings of the 1998 IEEE International Symposium on Information Theory, Aug. 1998. New York, NY, USA: IEEE, 1998. p. 3.August 1998Algorithms
Using Markov-Chain Mixing Time Estimates for the Analysis of Ant Colony OptimizationD. SudholtProceedings of the 11th Foundations of Genetic Algorithms Workshop (FOGA XI), pp. 139-150, Schwarzenberg, AustriaJanuary 2011Algorithms[PDF]

Using DNA Pools for Genotyping TriosK.B. Beckman, K.A. Abel, A. Braun, and E. HalperinNucleic Acids Research, Vol. 34, No. 19, electronic article no. 129November 2006Algorithms[PDF]

Using Contiguous Bi-Clustering for Data Driven Temporal Analysis of fMRI Based Functional ConnectivityA. Maron-Katz, E. B. Simon, Y. Jacob, K. Rosenberg, R. M. Karp, T. Hendler, and R. ShamirProceedings of the 4th Annual INCF Neuroinformatics Congress, Boston, MassachusettsSeptember 2011Algorithms[PDF]

Universal DNA Tag Systems: A Combinatorial Design SchemeA. Ben-Dor, R. Karp, B. Schwikowski, and Z. YakhiniProceedings of RECOMB 2000. 2000Algorithms
Understanding Science Through the Lens of ComputationR. KarpPresented at the Symposium on Transformational Information Engineering and Science, SingaporeJanuary 2010Algorithms
UbiMASS - Ubiquitous Mobile Agent System for Wireless Sensor NetworksF. Bagci, J. Wolf, B. Satzger, and T. UngererProceedings of the Third IEEE International Conference on Sensor Networks, Ubiquitous, and Trustworthy Computing (SUTC2010), Newport Beach, California, pp. 245-252June 2010Algorithms[PDF]

Two Special Cases of the Assignment ProblemR. M. Karp and S. LiDiscrete Mathematics (Netherlands), Vol. 13, No. 2, pp. 129-42October 1975Algorithms
TSP-Based Curve Reconstruction in Polynomial TimeE. Althaus and K. MelhornSIAM Journal of Computing 31(1), 2001. 2001Algorithms
TSP-Based Curve Reconstruction in Polynomial TimeE. Althaus and K. MelhornProceedings of the Eleventh Symposium on Discrete Algorithms, pp. 686-695, 2000. 2000Algorithms
Transitive Compaction in Parallel via BranchingsP. Gibbons, R. M. Karp, V. Ramachandran, D. Soroker, and R. TarjanJournal of Algorithms, Vol. 12, No. 1, pp. 110-25March 1991Algorithms
Trading with Committees: A Comparative StudyS. Rehfuss, L. Wu, and J. MoodyProceedings of the Third International Conference on Neural Networks in the Capital Markets, London, United KingdomOctober 1996Algorithms
Towards the Integrated Analysis, Visualization, and Reconstruction of Microbial Gene Regulatory NetworksJ. Baumbach, S. Rahmann, and A. TauchBriefings in Bioinformatics, Vol. 10, Issue 1, pp. 75-83January 2009Algorithms[PDF]

Towards Optimally Multiplexed Applications of Universal DNA Tag SystemsA. Ben-Dor, T. Hartman, B. Schwikowski, R. Sharan, and Z. YakhiniProceedings of the Seventh Annual International Conference on Research in Computational Molecular Biology (RECOMB'03), ACM Press, 48-56 2003Algorithms
Towards Optimally Multiplexed Applications of Universal ArraysA. Ben-Dor, T. Hartman, R. M. Karp, B. Schwikowski, R. Sharan, and Z. YakhiniJournal of Computational Biology, Vol. 11, Nos. 2-3, pp. 477-493January 2004Algorithms[PDF]

Towards Lightweight Self-Configuration in Wireless Sensor NetworksB. Satzger, F. Bagci, F. Kluge, and T. UngererProceedings of the 25th ACM Symposium on Applied Computing (ACM SAC 2010), Sierre, Switzerland, pp. 791-792March 2010Algorithms[PDF]

Towards Faster Stochastic Gradient SearchC. Darken and J. MoodyAdvances in Neural Information Processing Systems, Vol. 4, Moody, Hanson, and Lippmann, eds., Morgan Kaufmann, Palo Alto 1992Algorithms
Total Latency in Singleton Congestion GamesM. Gairing and F. SchoppmannProceedings of the Third International Workshop on Internet and Network Economics (WINE 2007), San Diego, California, pp. 381-387December 2007Algorithms
Torque: Topology-Free Querying of Protein Interaction NetworksS. Bruckner, F. Hueffner, R. M. Karp, R. Shamir, and R. SharanNucleic Acids Research, Vol. 37, pp. 106-108July 2009Algorithms[PDF]

Torque: Topology-Free Querying of Protein Interaction NetworksS. Bruckner, F. Hüffner, R. M. Karp, R. Shamir, and R. SharanProceedings of the 13th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2009), Tucson, Arizona, pp. 74-89May 2009Algorithms
Torque: Topology-Free Querying of Protein Interaction NetworksS. Bruckner, F. Hüffner, R. M. Karp, R. Shamir, and R. SharanJournal of Computational Biology, Vol. 17, Issue 3, pp. 237-252March 2010Algorithms
Topology-Free Querying of Protein Interaction NetworksS. Bruckner, F. Huffner, R. M. Karp, R. Shamir, and R. SharanJournal of Computational Biology, Vol. 17, Issue 3, pp. 237-252March 2010Algorithms[PDF]

Topologically-Aware Overlay Construction and Server SelectionM. Handley, R.M. Karp, S. Ratnasamy, and S. ShenkerProceedings, INFOCOM 2000. 2000Algorithms
Tight Lower Bounds for the Asymetric k-Center ProblemJ. Chuzhoy, S. Guha, E. Halperin, S. Khanna, G. Kortsarz and S. NaorIn Proceedings of the 36th Annual ACM Symposium on Theory of Computing (STOC04)January 05 2004Algorithms
Tight Bounds for the Cover Time of Multiple Random WalksR. Elsässer and T. SauerwaldProceedings of the 36th International Colloquium on Automata, Languages, and Programming (ICALP 2009), Rhodes, Greece, pp. 415-426July 2009Algorithms[PDF]

Three Combinatorial Problems in Computational and Genomic BiologyR. KarpIFORS Distinguished Lecture at the Joint International Meeting of the Canadian Operational Research Society and the Institute for Operations Research and the Management Sciences (CORS-INFORMS International), Toronto, CanadaJune 2009Algorithms
Theory of Computation as an Enabling Tool for the SciencesR. KarpPresented at the Turing Centennial Celebration, Princeton, New Jersey. Also presented at the 9th Annual Conference on Theory and Applications of Models of Computation (TAMC 2012), Turing Centenary Meeting, Beijing, ChinaMay 2012Algorithms
Theoretical improvements in algorithmic efficiency for network flow problemsJ. Edmonds and R. M. KarpJournal of the Association for Computing Machinery, Vol. 19, No. 2, p. 248-64April 1972Algorithms
The Weighted Coupon Collector's Problem and ApplicationsP. Berenbrink and T. SauerwaldProceedings of the 15th International Computing and Combinatorics Conference (COCOON 2009), Niagra Falls, New York, pp. 449-458July 2009Algorithms
The Restriction Scaffold ProblemA. Ben-Dor, R.M. Karp, B. Schwikowski, and R. ShamirJournal of Computational Biology, Vol. 10, No. 3-4, pp. 385-398 2003Algorithms
The Restriction Scaffold ProblemA. Ben-Dor, R.M. Karp, B Schwikowski, and R. ShamirProceedings of the Sixth Annual International Conference on Research in Computational Molecular Biology (RECOMB'02), 2002. 2002Algorithms
The Rank of Sparse Random Matrices Over Finite FieldsJ. Blomer, R.M. Karp, and E. WelzlRandom Structures & Algorithms, July 1997, vol.10, (no.4):407-19.July 1997Algorithms
The mortgage problemR. El-Yaniv and R. M. KarpProceedings of the Second Israel Symposium on Theory and Computing Systems (Cat. No. 93TH0520-7), Natanya, Israel, pp. 304-12June 1993Algorithms
The Minimum-Entropy Set Cover ProblemE. Halperin and R.M. KarpProceedings of ICALPJanuary 05 2004Algorithms
The Minimum-Entropy Set Cover ProblemE. Halperin and R. M. KarpTheoretical Computer Science, Vol. 348, Issue 2, pp. 240-250December 2005Algorithms
The Intrinsic Dimensionality of GraphsR. Krauthgamer and J.R. LeeManuscript, 2002. 2002Algorithms
The Efficiency of Resolution and Davis-Putnamn ProceduresP. Beame, R. M. Karp, T. Pitassi, and M. SaksSIAM Journal of Computing, Vol. 31, No. 4, pp. 1048-1075 2002Algorithms
The Effective Number of Parameters: an Analysis of Generalization and Regularization in Nonlinear Learning SystemsJ. MoodyAdvances in Neural Information Processing Systems Vol. 4, Moody, Hanson, and Lippmann, eds., Morgan Kaufmann, Palo Alto, pp. 847-854 1992Algorithms
The Complexity of Testing Whether a Graph is a SuperconcentratorM. Blum, R. M. Karp, O.Vornberger, C.H. Papadimitriou, and M. YannakakisInformation Processing Letters, Vol. 13, No. 4-5, pp. 164-7 1981Algorithms
The complexity of parallel searchR.M. Karp, E. Upfal, and A. WigdersonJournal of Computer and System Sciences, Vol. 36, No. 2. Also in the proceedings of the 17th Annual ACM Symposium on the Theory of Computing, Providence, Rhode Island, May 1985, pp. 225-53April 1988Algorithms
The complexity of parallel computationR. M. Karp, Edited by: C.E. LeisersonProceedings of the Fourth MIT Conference on Advanced Resarch in VLSI, Cambridge, Massachusetts, pp.197April 1986Algorithms
The complexity of parallel computationR. M. KarpProceedings of the 23rd Annual Allerton Conference on Communication, Control, and Computing, Monticello, Illinois, p. 1October 1985Algorithms
The bit vector intersection problemR. M. Karp, O. Waarts and G. ZweigProceedings of the 36th Annual Symposium on Foundations of Computer Science (FOCS'95), Milwaukee, Wisconsin, pp. 621-30October 1995Algorithms
The Benefit of Migration in Parallel Evolutionary AlgorithmsJ. Laessig and D. SudholtProceedings of the Genetic and Evolutionary Computation Conference (GECCO 2010), Portland, Oregon, pp. 1105-1112July 2010Algorithms
Term Structure of Interactions of Foreign Exchange RatesJ. Moody and H. YangComputational Finance 1999, edited by Y. S. Abu-Mostafa, B. LeBaron, A. W. Lo, and A. S. Weigend, MIT Press, Cambridge, MA, 2000. 2000Algorithms

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