| On Parallel Evaluation of Game Trees | R.M. Karp and Y. Zhang | Journal of the ACM, Nov. 1998, vol.45, (no.6):1050-75. | 1998 | Algorithms | |
| Asymmetric K-Center Is Log* N-Hard to Approximate | J. Chuzhoy, S. Guha, E. Halperin, S. Khanna, G. Kortsarz, R. Krauthgamer, and J. Naor | Journal of the ACM, Vol. 52, Issue 4, pp. 538-551 | July 2005 | Algorithms | |
| Theoretical improvements in algorithmic efficiency for network flow problems | J. Edmonds and R. M. Karp | Journal of the Association for Computing Machinery, Vol. 19, No. 2, p. 248-64 | April 1972 | Algorithms | |
| A fast parallel algorithm for the maximal independent set problem | R. M. Karp and A. Wigderson | Journal of the Association for Computing Machinery, Vol. 32, No. 4, pp. 762-73 | October 1985 | Algorithms | |
| Randomized parallel algorithms for backtrack search and branch-and-bound computation | R. M. Karp and Y. Zhang | Journal of the Association for Computing Machinery, Vol. 40, No.3, pp. 765-89 | July 1993 | Algorithms | |
| Probabilistic recurrence relations | R. M. Karp | Journal of the Association for Computing Machinery, Vol. 41, No. 6, pp. 1136-50 | November 1994 | Algorithms | |
| Implicit Hitting Set Problems and Multi-Genome Alignment | R. M. Karp | Keynote speech at the 21st Annual Symposium on Combinatorial Pattern Matching (CPM2010), New York, New York | June 2010 | Algorithms | |
| Decision Technologies for Computational Finance, Proceedings of the London Conference | A. Refenes, N. Burgess, and J. Moody, editors. | Kluwer Financial Publishing, The Netherlands, 1998. | 1998 | Algorithms | |
| Reinforcement Learning for Trading: Immediate vs. Future Rewards | J. Moody and M. Saffell | Knowledge Discovery and Datamining, Proceedings of the 1998 New York Conference, AAAI Press, 1998. | 1998 | Algorithms | |
| Chemokine Polymorphisms and Lymphoma: A Pooled Analysis | P. M. Bracci, C. F. Skibola, L. Conde, E. Halperin, T. Lightfoot, A. Smith, R. A. Paynter, D. R. Skibola, L. Agana, E. Roman, E. Kane, and J. K. Wiencke | Leukemia and Lymphoma, Vol. 51, No. 3, pp. 497-506 | March 2010 | Algorithms | |
| Experimental Design for Multiplexed SNP Genotyping | J. Gramm, A. Ben-Dor, and R. Sharan | Manuscript | January 05 2004 | Algorithms | |
| Constant-Factor Approximation of Vertex-Cuts in Planar Graphs | E. Amir, R. Krathgamer, and S. Rao | Manuscript, 2002. | 2002 | Algorithms | |
| The Intrinsic Dimensionality of Graphs | R. Krauthgamer and J.R. Lee | Manuscript, 2002. | 2002 | Algorithms | |
| Nearly Optimal Competitive Online Replacement Policies | R. El-Yaniv and R.M. Karp | Mathematics of Operations Research, Nov. 1997, vol.22, (no.4):814-39. | 1997 | Algorithms | |
| A family of simplex variants solving an m*d linear program in expected number of pivot steps depending on d only | I. Adler, R. M. Karp, and R. Shamir | Mathematics of Operations Research, Vol. 11, No. 4, pp. 570-90 | November 1986 | Algorithms | |
| Probabilistic analysis of network flow algorithms | R. M. Karp, R. Motwani, and N. Nisan | Mathematics of Operations Research, Vol. 18, No. 1, pp. 71-97 | February 1993 | Algorithms | |
| Average case analysis of a heuristic for the assignment problem | R.M. Karp, A.H.G. Rinnooy Kan, and R.V. Vohra | Mathematics of Operations Research, Vol. 19, No. 3, pp. 513-22 | August 1994 | Algorithms | |
| Probabilistic Analysis of Partitioning Algorithms for the Traveling-salesman Problem in the Plane | R. M. Karp | Mathematics of Operations Research, Vol. 2, No. 3, pp. 209-24 | August 1977 | Algorithms | |
| Genotype Is a Stronger Determinant than Sex of the Mouse Gut Microbiota | A. Kovacs, N. Ben-Jacob, H. Tayem, E. Halperin, F. A. Iraqi, and U. Gophna | Microbial Ecology, Vol. 61, No. 2, pp. 423-428 | February 2011 | Algorithms | |
| Reinforcement Learning for Trading, Advances in Neural Information Processing Systems 11 | M.S. Kearns, S.A. Solla, and D.A. Cohn, eds. | MIT Press, Cambridge, Massachusetts 1999. | 1999 | Algorithms | |
| Dynamic Network Topology Changes in Functional Modules Predict Responses to Oxidative Stress in Yeast | P. V. Gopalacharyulu, V. R. Velagapudi, E. Lindfors, E. Halperin, and M. Orešič | Molecular BioSystems, Vol. 5, Issue 3, pp. 276-287 | March 2009 | Algorithms | |
| E-QED: An Efficient Method for Interpreting eQTL Associations Using Protein Networks | S. Suthram, A. Beyer, R. M. Karp, Y. Eldar, and T. Ideker | Molecular Systems Biology, Vol. 4 | March 2008 | Algorithms | |
| Idempotents Among Partesan Games | E. Berlekamp | More Games of No Chance, MSRI Publicatons vol. 42, pp 3-23, Cambridge University Press, 2002. | 2002 | Algorithms | |
| Go Thermography: The 4/12/98 Jiang-Rui Environmental Endgame | B. Spight | More Games of No Chance, MSRI Publictations vo. 42, Cambridge University Press, 2002. | 2002 | Algorithms | |
| Advances in Neural Information Processing Systems 4 | J. Moody, S. Hanson, and R. Lippmann, eds. | Morgan Kaufmann, Palo Alto | 1992 | Algorithms | |
| Advances in Neural Information Processing Systems 3 | R. Lippmann, J. Moody, and D. Touretzky, eds. | Morgan Kaufmann, Palo Alto | 1991 | Algorithms | |
| When to Use Bit-Wise Neutrality | T. Friedrich and F. Neumann | Natural Computing, Vol. 9, No. 1, pp. 283-294 | March 2010 | Algorithms | [PDF]
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| Maximizing Power in Association Studies | E. Halperin and D. A. Stephan | Nature Biotechnology, Vol. 27, Issue 3, pp. 255-256 | March 2009 | Algorithms | [PDF]
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| SNP Imputation in Association Studies | E. Halperin and D. A. Stephan | Nature Biotechnology, Vol. 27, No. 4, pp. 349-351 | April 2009 | Algorithms | [PDF]
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| Genetic Variants at 6p21.33 Are Associated with Susceptibility to Follicular Lymphoma | C. F. Skibola, P. M. Bracci, E. Halperin, L. Conde, D. W. Craig, L. Agana, K. Iyadurai, N. Becker, A. Brooks-Wilson, J. D. Curry, J. J. Spinelli, E. A. Holly, J. Riby, L. Zhang, A. Nieters, M. T. Smith, and K. M. Brown | Nature Genetics, Vol. 41, No. 8, pp. 873-875 | August 2009 | Algorithms | [PDF]
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| Genomic Privacy and Limits of Individual Detection in a Pool | S. Sankararaman, G. Obozinski, M. I. Jordan, and E. Halperin | Nature Genetics, Vol. 41, No. 9, pp. 965-967 | September 2009 | Algorithms | [PDF]
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| Genome-Wide Association Study of Follicular Lymphoma Identifies a Risk Locus at 6p21.32 | L. Conde, E. Halperin, N. K. Akers, K. M. Brown, K. E. Smedby, N. Rothman, et al. | Nature Genetics, Vol. 42, No. 8, pp. 661-664. DOI:10.1038/ng.626 | August 2010 | Algorithms | |
| Large-scale Association Analysis Identifies 13 New Susceptibility Loci for Coronary Artery Disease | The CARDIoGRAM Consortium | Nature Genetics, Vol. 43, No. 4, pp. 333-338 | March 2011 | Algorithms | |
| A Model-Based Approach for Analysis of Spatial Structure in Genetic Data | W.-Y. Yang, J. Novembre, E. Eskin, and E. Halperin | Nature Genetics, Vol. 44, pp. 725-731 | May 2012 | Algorithms | [PDF]
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| Partitioning Biological Data with Transitivity Clustering | T. Wittkop, D. Emig, S. J. Lange, S. Rahmann, M. Albrecht, J. H. Morris, S. Boecker, J. Stoye, and J. Baumbach | Nature Methods, Vol. 7, Issue 6, pp. 419-420 | June 2010 | Algorithms | |
| Integrated Analysis and Reconstruction of Microbial Transcriptional Gene Regulatory Networks Using CoryneRegNet | J. Baumbach, T. Wittkop, C. K. Kleindt, and A. Tauch | Nature Protocols, Vol. 4, Issue 6, pp. 992-1005 | June 2009 | Algorithms | |
| An Algorithm to Solve the m*n Assignment Problem in Expected Time O(mn log n)* | R. M. Karp | Networks, Vol. 10, No. 2, pp. 143-52 | 1980 | Algorithms | |
| On the Computational Complexity of Combinatorial Problems | R. M. Karp | Networks, Vol. 5, No.1. Also in the Proceedings of the Symposium on Large-Scale Networks, Evanston, Illinois, pp. 45-68, April 1974 | January 1975 | Algorithms | |
| Fast Learning in Networks of Locally-Tuned Processing Units | J. Moody and C. Darken | Neural Computation, Vol. 1, pp. 289-303 | 1989 | Algorithms | |
| Spontaneous Development of Modularity in Simple Cortical Models | A. Chernjavsky and J. Moody | Neural Computation, Vol. 2, Issue 3, pp. 334-354 | 1990 | Algorithms | |
| A Smoothing Regularizer for Feedforward and Recurrent Neural Networks | L. Wu and J. Moody | Neural Computation, Vol. 8, Issue 3 | 1996 | Algorithms | |
| Distance Metric Learning, with Application to Clustering with Side-Information | E.P. Xing, A.Y. Ng, M.I. Jordan, and S. Russell | Neural Information Processing Systems, 2002. | 2002 | Algorithms | |
| A Hierarchical Bayesian Markovian Model for Motifs in Biopolymer Sequences | E.P. Xing, M.I. Jordan, R.M. Karp, and S. Russell | Neural Information Processing Systems, 2002. | 2002 | Algorithms | |
| Learning Rate Schedules for Faster Stochastic Gradient Search | C. Darken, J. Chang, and J. Moody | Neural Networks for Signal Processing, Vol. 2 - Proceedings of the 1992 IEEE Workshop | August 1992 | Algorithms | |
| Architecture Selection Strategies for Neural Networks: Application to Corporate Bond Rating Prediction | J. Moody and J. Utans | Neural Networks in the Capital Markets, Refenes A. N. (ed), John Wiley & Sons, New York | 1994 | Algorithms | |
| Forecasting the Economy with Neural Nets: A Survey of Challenges and Solutions | J. Moody | Neural Networks: Tricks of the Trade, Genevieve B. Orr and Klaus-Robert Muller, eds., Springer Verlag, pp. 347-371, 1998. | 1998 | Algorithms | |
| Mathematical Challenges from Genomics and Molecular Biology | R. M. Karp | Notices of the American Mathematical Society, Vol. 49, No. 5, pp. 544-553 | 2002 | Algorithms | |
| CREME: Cis-Regulatory Module Explorer for the Human Genome | R. Sharan, A. Ben-Hur, G.G. Loots, and I. Ovcharenko | Nucleic Acids Research 32, pp. W253-W256 | January 05 2004 | Algorithms | |
| PathBLAST: A Tool for Alignment of Protein Interaction Networks | B.P. Kelley, B. Yuan, F. Lewitter, R. Sharan, B.R. Stockwell, and T. Ideker | Nucleic Acids Research 32, pp. W83-W88 | January 05 2004 | Algorithms | |
| Using DNA Pools for Genotyping Trios | K.B. Beckman, K.A. Abel, A. Braun, and E. Halperin | Nucleic Acids Research, Vol. 34, No. 19, electronic article no. 129 | November 2006 | Algorithms | [PDF]
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