| Running Time Analysis of ACO Systems for Shortest Path Problems | C. Horoba and D. Sudholt | Proceedings of Engineering and Stochastic Local Search Algorithms (SLS 2009), Brussels, Belgium, pp. 76-91 | September 2009 | Algorithms | [PDF]
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| Increasing the Power of Association Studies by Imputation-Based Sparse Tag SNP Selection | O. Davidovich, G. Kimmel, E. Halperin, and R. M. Shamir | Communications in information and Systems, Vol. 9, No. 3, pp. 269-282 | September 2009 | Algorithms | [PDF]
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| Detection of Molecular Paths Associated with Insulitis and Type 1 Diabetes in Non-Obese Diabetic Mouse | E. Lindfors, P. V. Gopalachrayulu, E. Halperin, and M. Oresic | PLoS, Vol. 4, Issue 10, e7323 | October 2009 | Algorithms | [PDF]
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| Aufträge, Partner, Kosten - Kooperation statt Konkurrenz | J. Lässig, S. Heinrich, and U. Trommler | IT&Production, Issue 10, pp. 74-76 | November 2009 | Algorithms | |
| Analysis of Diversity-Preserving Mechanisms for Global Exploration | T. Friedrich, P. S. Oliveto, D. Sudholt, and C. Witt | Evolutionary Computation, Vol. 17, Issue 4, pp. 455-476, Winter 2009 | December 2009 | Algorithms | [PDF]
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| Covering Games: Approximation Through Non-Cooperation | M. Gairing | Proceedings of the Fifth Workshop on Internet and Network Economics (WINE '09), Rome, Italy, pp. 184-195 | December 2009 | Algorithms | [PDF]
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| Genome-Wide Association Data Reveal a Global Map of Genetic Interaction Among Protein Complexes | G. Hannum., R. Srivas., A. Guénolé, H. van Attikum, N. J. Krogan, R. M. Karp, and T. Ideker | PLoS Genetics, Vol. 5, Issue 12, e1000782 | December 2009 | Algorithms | [PDF]
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| Comparative Study of Different Approaches to Particle Swarm Optimization in Theory and Practice | S. Thiem and J. Laessig | In Particle Swarm Optimization: Theory, Techniques and Applications, A. E. Olsson, ed., Nova Science Publishers, ISBN: 978-1-61668-527-0 | 2010 | Algorithms | |
| A New Biology for the 21st Century | National Research Council of the National Academies | Report of Committee on a New Biology for the 21st Century: Ensuring the United States Leads the Coming Biology Revolution | 2010 | Algorithms | [PDF]
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| A Practical Computer Immunology Approach for Self-Protection Enhanced by Optimization Techniques | A. Pietzowski, B. Satzger, W. Trumler, and T. Ungerer | Journal of Autonomic and Trusted Computing | 2010 | Algorithms | |
| On Mixing and Edge Expansion Properties in Randomized Broadcasting | T. Sauerwald | Algorithmica, Vol. 56, No. 1, pp. 51-88 | January 2010 | Algorithms | |
| Quasirandom Load Balancing | T. Friedrich, M. Gairing, and T. Sauerwald | Proceedings of the ACM-SIAM Symposium on Discrete Algorithms (SODA 2010), Austin, Texas, pp. 1620-1629 | January 2010 | Algorithms | [PDF]
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| Efficient Broadcast on Random Geometric Graphs | M. Bradonjić, R. Elsässer, T. Friedrich, T. Sauerwald, and A. Stauffer | Proceedings of the ACM-SIAM Symposium on Discrete Algorithms (SODA 2010), Austin, Texas, pp. 1412-1421 | January 2010 | Algorithms | [PDF]
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| Analysis of an Asymmetric Mutation Operator | T. Jansen and D. Sudholt | Evolutionary Computation, Vol. 18, No. 1, pp. 1-26 | January 2010 | Algorithms | |
| Leveraging Genetic Variability Across Populations for the Identification of Causal Variants | N. Zaitlen, B. Pasaniuc, T. Gur, E. Zic, and E. Halperin | The American Journal of Human Genetics, Vol. 86, Issue 1, pp. 23-33 | January 2010 | Algorithms | |
| Understanding Science Through the Lens of Computation | R. Karp | Presented at the Symposium on Transformational Information Engineering and Science, Singapore | January 2010 | Algorithms | |
| Speeding Up Random Walks with Neighborhood Exploration | P. Berenbrink, C. Cooper, R. Elsaesser, T. Radzik, and T. Sauerwald | Proceedings of the ACM-SIAM Symposium on Discrete Algorithms (SODA 2010), Austin, Texas, pp. 1422-1435 | January 2010 | Algorithms | [PDF]
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| Average-Case Analysis of Incremental Topological Ordering | D. Ajwani and T. Friedrich | Discrete Applied Mathematics, Vol. 158, Issue 4, pp. 240-250 | February 2010 | Algorithms | [PDF]
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| Plateaus Can Be Harder in Multi-Objective Optimization | T. Friedrich, N. Hebbinghaus, and F. Neumann | Theoretical Computer Science, Vol. 411, Issue 6, pp. 854-864 | February 2010 | Algorithms | [PDF]
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| When to Use Bit-Wise Neutrality | T. Friedrich and F. Neumann | Natural Computing, Vol. 9, No. 1, pp. 283-294 | March 2010 | Algorithms | [PDF]
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| Chemokine Polymorphisms and Lymphoma: A Pooled Analysis | P. M. Bracci, C. F. Skibola, L. Conde, E. Halperin, T. Lightfoot, A. Smith, R. A. Paynter, D. R. Skibola, L. Agana, E. Roman, E. Kane, and J. K. Wiencke | Leukemia and Lymphoma, Vol. 51, No. 3, pp. 497-506 | March 2010 | Algorithms | |
| Towards Lightweight Self-Configuration in Wireless Sensor Networks | B. Satzger, F. Bagci, F. Kluge, and T. Ungerer | Proceedings of the 25th ACM Symposium on Applied Computing (ACM SAC 2010), Sierre, Switzerland, pp. 791-792 | March 2010 | Algorithms | [PDF]
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| A Self-Stabilizing Algorithm for Cut Problems in Synchronous Networks | T. Sauerwald and D. Sudholt | Theoretical Computer Science, Vol. 411, Issues 14-15, pp. 1599-1612 | March 2010 | Algorithms | |
| Haplotype Inference in Complex Pedigrees | B. Kirkpatrick, E. Halperin, and R. M. Karp | Journal of Computational Biology, Vol. 17, No. 3, pp. 269-280 | March 2010 | Algorithms | |
| Topology-Free Querying of Protein Interaction Networks | S. Bruckner, F. Huffner, R. M. Karp, R. Shamir, and R. Sharan | Journal of Computational Biology, Vol. 17, Issue 3, pp. 237-252 | March 2010 | Algorithms | [PDF]
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| Torque: Topology-Free Querying of Protein Interaction Networks | S. Bruckner, F. Hüffner, R. M. Karp, R. Shamir, and R. Sharan | Journal of Computational Biology, Vol. 17, Issue 3, pp. 237-252 | March 2010 | Algorithms | |
| Accurate Estimation of Expression Levels of Homologous Genes in RNA-Seq Experiments | B. Pasaniuc, N. Zaitlen, and E. Halperin | Proceedings of the Fourteenth International Conference on Research in Computational Biology (RECOMB 2010), Lisbon, Portugal, pp. 397-409. Also appears in Journal of Computational Biology (a special issue of RECOMB), Vol. 18, Issue 3, pp. 489-468, March 2011. | April 2010 | Algorithms | [PDF]
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| Prediction of Phenotype Information from Genotype Data | N. Yosef, J. Gramm, Q.-F. Wang, W. S. Noble, R. M. Karp, and R. Sharan | Communications in Information and Systems, Vol. 10, No. 2, pp. 99-114 | May 2010 | Algorithms | |
| Deciphering the Genetic Components of Human Diseases | E. Halperin | Invited talk at the 7th International Conference on Algorithms and Complexity (CIAC 2010), Rome, Italy | May 2010 | Algorithms | |
| New Approaches to Enterprise Cooperation Generation and Management | J. Laessig and U. Trommler | Proceedings of the 12th International Conference on Enterprise Information Systems (ICEIS 2010), Funchal, Portugal | June 2010 | Algorithms | |
| Power Prediction in Smart Grids with Evolutionary Local Kernel Regression | O. Kramer, B. Satzger, and J. Laessig | Proceedings of the Fifth International Conference on Hybrid Artificial Intelligence Systems (HAIS 2010), San Sebastian, Spain, pp. 262-269 | June 2010 | Algorithms | [PDF]
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| A Novel Constraint Satisfaction Problem Solver for Self-Configuring Distributed Systems with Highly Dynamic Behavior | B. Satzger, F. Bagci, and T. Ungerer | Proceedings of the IEEE World Congress on Computational Intelligence (WCCI 2010), Barcelona, Spain, pp. 1-6 | June 2010 | Algorithms | [PDF]
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| UbiMASS - Ubiquitous Mobile Agent System for Wireless Sensor Networks | F. Bagci, J. Wolf, B. Satzger, and T. Ungerer | Proceedings of the Third IEEE International Conference on Sensor Networks, Ubiquitous, and Trustworthy Computing (SUTC2010), Newport Beach, California, pp. 245-252 | June 2010 | Algorithms | [PDF]
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| Partitioning Biological Data with Transitivity Clustering | T. Wittkop, D. Emig, S. J. Lange, S. Rahmann, M. Albrecht, J. H. Morris, S. Boecker, J. Stoye, and J. Baumbach | Nature Methods, Vol. 7, Issue 6, pp. 419-420 | June 2010 | Algorithms | |
| Implicit Hitting Set Problems and Multi-Genome Alignment | R. M. Karp | Keynote speech at the 21st Annual Symposium on Combinatorial Pattern Matching (CPM2010), New York, New York | June 2010 | Algorithms | |
| Recognition of Manual Motions with Dimension Reduction and Dynamic Time Warping | M. Martin, J. Maycock, F. Schmidt, and O. Kramer | Proceedings of the Fifth International Conference on Hybrid Artificial Intelligence Systems (HAIS 2010), San Sebastian, Spain, Vol. 1, pp. 221-228 | June 2010 | Algorithms | |
| Ant Colony Optimization for Stochastic Shortest Path Problems | C. Horoba and D. Sudholt | Proceedings of the Genetic and Evolutionary Computation Conference (GECCO 2010), Portland, Oregon, pp. 1465-1472 | July 2010 | Algorithms | |
| The Benefit of Migration in Parallel Evolutionary Algorithms | J. Laessig and D. Sudholt | Proceedings of the Genetic and Evolutionary Computation Conference (GECCO 2010), Portland, Oregon, pp. 1105-1112 | July 2010 | Algorithms | |
| A Few Ants Are Enough: ACO with Iteration-Best Update | F. Neumann, D. Sudholt, and C. Witt | Proceedings of the Genetic and Evolutionary Computation Conference (GECCO 2010), Portland, Oregon, pp. 63-70 | July 2010 | Algorithms | |
| A Novel Constraint Satisfaction Problem Solver for Self-Configuring Distributed Systems with Highly Dynamic Behavior | B. Satzger, F. Bagci, and T. Ungerer | Proceedings of the IEEE World Congress on Computational Intelligence (WCCI 2010), Barcelona, Spain | July 2010 | Algorithms | [PDF]
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| Genomic Privacy and Limits of Individual Detection in a Pool | S. Sankararaman, G. Obozinski, M. I. Jordan, and E. Halperin | Presented at the 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2010), Boston, Massachusetts | July 2010 | Algorithms | |
| Adaptive Heuristic Estimates for Automated Planning Using Regression | B. Satzger, O. Kramer, and J. Laessig | Proceedings of the 2010 International Conference on Artificial Intelligence, p. 576-581, Las Vegas, Nevada | July 2010 | Algorithms | |
| Managing Energy in a Virtual Power Plant Using Learning Classifier Systems | O. Kramer, B. Satzger, and J. Laessig | Proceedings of the 2010 International Conference on Genetic and Evolutionary Methods (GEM 2010), Las Vegas, Nevada | July 2010 | Algorithms | [PDF]
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| Simulation-Based Evolutionary Optimization of Complex Multi-Location Inventory Models | C. A. Hochmuth, J. Laessig, and S. Thiem | Proceedings of the Third IEEE International Conference on Computer Science and Information Technology (IEEE ICCSIT 2010), pp. 703-708, Chengdu, China | July 2010 | Algorithms | [PDF]
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| Genome-Wide Association Data Reveal a Global Map of Genetic Interactions among Protein Complexes | R. Srivas, G. Hannum, A. Guénolé, H. van Attikum, N. J. Krogan, R. M. Karp, and T. Ideker | Presented at the 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2010), Boston, Massachusetts | July 2010 | Algorithms | |
| DBSCAN-Based Multi-Objective Niching to Approximate Equivalent Pareto-Subsets | O. Kramer and H. Danielsiek | Proceedings of the Genetic and Evolutionary Computation Conference (GECCO 2010), Portland, Oregon, pp. 503-510 | July 2010 | Algorithms | [PDF]
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| AltAnalyze and DomainGraph: Analyzing and Visualizing Exon Expression Data | D. Emig, N. Salomonis, J. Baumbach, T. Lengauer, B. R. Conklin, and M. Albrecht | Nucleic Acids Research, Vol. 38, Web Server Issue, pp. W755-W762 | July 2010 | Algorithms | [PDF]
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| Computing Nash Equilibria for Scheduling on Restricted Parallel Links | M. Gairing, T. Lücking, M. Mavronicolas, and B. Monien | Theory of Computing Systems, Vol. 47, No. 2, pp. 405-432 | August 2010 | Algorithms | |
| Approximating the Volume of Unions and Intersections of High-Dimensional Geometric Objects | K. Bringmann and T. Friedrich | Computational Geometry, Vol. 43, Issues 6-7, pp. 601-610 | August 2010 | Algorithms | [PDF]
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| Smoothed Analysis of Balancing Networks | T. Friedrich, T. Sauerwald, and D. Vilenchik | In Random Structures and Algorithms, Vol. 39, No. 1, pp. 115-138, DOI: 10.1002/rsa.20341 | August 2010 | Algorithms | |
