| Learning Rate Schedules for Faster Stochastic Gradient Search | C. Darken, J. Chang, and J. Moody | Neural Networks for Signal Processing, Vol. 2 - Proceedings of the 1992 IEEE Workshop | August 1992 | Algorithms | |
| Towards Faster Stochastic Gradient Search | C. Darken and J. Moody | Advances in Neural Information Processing Systems, Vol. 4, Moody, Hanson, and Lippmann, eds., Morgan Kaufmann, Palo Alto | 1992 | Algorithms | |
| Note on Learning Rate Schedules for Stochastic Optimization | C. Darken and J. Moody | Advances in Neural Information Processing Systems, Vol. 3, Lippmann, Moody, and Touretzky, eds. Morgan Kaufmann, Palo Alto | 1991 | Algorithms | |
| Fast, Adaptive K-Means Clustering: Some Empirical Results | C. Darken and J. Moody | Proceedings of the IEEE International Joint Conference on Neural Networks (IJCNN 1990), San Diego, California | 1990 | Algorithms | |
| Simulation-Based Evolutionary Optimization of Complex Multi-Location Inventory Models | C. A. Hochmuth, J. Laessig, and S. Thiem | Proceedings of the Third IEEE International Conference on Computer Science and Information Technology (IEEE ICCSIT 2010), pp. 703-708, Chengdu, China | July 2010 | Algorithms | [PDF]
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| PathBLAST: A Tool for Alignment of Protein Interaction Networks | B.P. Kelley, B. Yuan, F. Lewitter, R. Sharan, B.R. Stockwell, and T. Ideker | Nucleic Acids Research 32, pp. W83-W88 | January 05 2004 | Algorithms | |
| Go Thermography: The 4/12/98 Jiang-Rui Environmental Endgame | B. Spight | More Games of No Chance, MSRI Publictations vo. 42, Cambridge University Press, 2002. | 2002 | Algorithms | |
| Adaptive Heuristic Estimates for Automated Planning Using Regression | B. Satzger, O. Kramer, and J. Laessig | Proceedings of the 2010 International Conference on Artificial Intelligence, p. 576-581, Las Vegas, Nevada | July 2010 | Algorithms | |
| Towards Lightweight Self-Configuration in Wireless Sensor Networks | B. Satzger, F. Bagci, F. Kluge, and T. Ungerer | Proceedings of the 25th ACM Symposium on Applied Computing (ACM SAC 2010), Sierre, Switzerland, pp. 791-792 | March 2010 | Algorithms | [PDF]
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| A Novel Constraint Satisfaction Problem Solver for Self-Configuring Distributed Systems with Highly Dynamic Behavior | B. Satzger, F. Bagci, and T. Ungerer | Proceedings of the IEEE World Congress on Computational Intelligence (WCCI 2010), Barcelona, Spain | July 2010 | Algorithms | [PDF]
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| A Novel Constraint Satisfaction Problem Solver for Self-Configuring Distributed Systems with Highly Dynamic Behavior | B. Satzger, F. Bagci, and T. Ungerer | Proceedings of the IEEE World Congress on Computational Intelligence (WCCI 2010), Barcelona, Spain, pp. 1-6 | June 2010 | Algorithms | [PDF]
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| Autonomous and Scalable Failure Detection in Distributed Systems | B. Satzger, A. Pietzowski, and T. Ungerer | International Journal of Autonomous and Adaptive Communications Systems, Vol. 4, No.1, pp. 61-77 | January 2011 | Algorithms | |
| An information entropy approach to the small-lot concept | B. Ronen and R. M. Karp | IEEE Transactions on Engineering Management, Vol. 41, No. 1, p. 89-92 | February 1994 | Algorithms | |
| A Generic Coalescent-Based Framework for the Selection of a Reference Panel for Imputation | B. Pasanuic, R. Avinery, T. Gur, C. F. Skibola, P. M. Bracci, and E. Halperin | Genetic Epidemiology, Vol. 34, Issue 8, pp. 773-782 | December 2010 | Algorithms | [PDF]
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| Inference of Locus-Specific Ancestry in Closely Related Populations | B. Pasaniuc, S. Sankararaman, G. Kimmel, and E. Halperin | Proceedings of the 17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) and the 8th European Conference on Computational Biology (ECCB), Stockholm, Sweden. In Bioinformatics, Vol. 25, No. 12, pp. 213-221 | June 2009 | Algorithms | [PDF]
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| Accurate Estimation of Expression Levels of Homologous Genes in RNA-Seq Experiments | B. Pasaniuc, N. Zaitlen, and E. Halperin | Proceedings of the Fourteenth International Conference on Research in Computational Biology (RECOMB 2010), Lisbon, Portugal, pp. 397-409. Also appears in Journal of Computational Biology (a special issue of RECOMB), Vol. 18, Issue 3, pp. 489-468, March 2011. | April 2010 | Algorithms | [PDF]
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| Imputation-Based Local Ancestry Inference in Admixed Populations | B. Pasaniuc, J. Kennedy, and I. I. Mandoiu | Proceedings of the Fifth International Symposium on Bioinformatics Research and Applications (ISBRA 2009), Fort Lauderdale, Florida, pp. 221-233 | May 2009 | Algorithms | [PDF]
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| Presymptomatic Risk Assessment for Chronic Non-Communicable Diseases | B. Padhukasahasram, E. Halperin, J. Wessel, D. J. Thomas, E. Silver, H. Trumbower, M. Cargill, and D. A. Stephan | PLoS ONE Vol. 5, No. 12. doi:10.1371/journal.pone.0014338 | December 2010 | Algorithms | |
| Conserved Pathways Within Bacteria and Yeast as Revealed by Global Protein Network Alignment | B. P. Kelley, R. Sharan, R. M. Karp, E.T. Sittler, D. E. Root, B. R. Stockwell, and T. Ideker | Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 20, pp. 11394-11399. DOI:10.1073/pnas.1534710100. | September 2003 | Algorithms | [PDF]
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| Comparing Pedigree Graphs | B. Kirkpatrick, Y. Reshef, H. Finucane, H. Jiang, B. Zhu, and R. M. Karp | Journal of Computational Biology | 2012 | Algorithms | [PDF]
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| Pedigree Reconstruction Using Identity by Descent | B. Kirkpatrick, S. C. Li, R. M. Karp, and E. Halperin | Proceedings of the 15th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2011),Vancouver, British Columbia, Canada, pp. 136-152. Also appeared in Journal of Computational Biology, Vol. 18, No. 11, pp. 1481-1493, November 2011. | March 2011 | Algorithms | [PDF]
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| Haplotype Inference in Complex Pedigrees | B. Kirkpatrick, J. Rosa, E. Halperin, and R. M. Karp | Proceedings of the 13th Annual International Conference on Research in Computational Molecular Biology (RECOMB2009), Tucson, Arizona, pp. 108-120 | May 2009 | Algorithms | [PDF]
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| Algorithms for Comparing Pedigree Graphs | B. Kirkpatrick, H. Finucane, Y. Reshef, and R. Karp | Presented at the 10th Workshop on Algorithms in Bioinformatics (WABI 2010), Liverpool, United Kingdom | September 2010 | Algorithms | [PDF]
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| Haplotype Inference in Complex Pedigrees | B. Kirkpatrick, E. Halperin, and R. M. Karp | Journal of Computational Biology, Vol. 17, No. 3, pp. 269-280 | March 2010 | Algorithms | |
| HAPLOPOOL: Improving Haplotype Frequency Estimation Through DNA Pools and Phylogenetic Modeling | B. Kirkpatrick, C. Santos Armendariz, R. M. Karp, and E. Halperin | Bioinformatics, Vol. 23, No. 22, pp. 3048-3055 | November 2007 | Algorithms | [PDF]
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| Haplotypes versus Genotypes on Pedigrees | B. Kirkpatrick | Proceedings of the 10th Workshop on Algorithms in Bioinformatics (WABI 2010), Liverpool, United Kingdom, pp. 136-147 | September 2010 | Algorithms | [PDF]
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| Load Balancing in Dynamic Structured P2P Systems | B. Godfrey, R.M. Karp, K. Lakshminarayanan, S. Surana, and I. Stoica | Proceedings of INFOCOMM | January 05 2004 | Algorithms | |
| Optimizing Monotone Functions Can Be DifficultOptimizing Monotone Functions Can Be Difficult | B. Doerr, T. Jansen, D. Sudholt, C. Winzen, and C. Zarges | Proceedings of the 11th International Conference on Parallel Problem Solving from Nature (PPSN 2010), Krakow, Poland, pp. 42-51 | September 2010 | Algorithms | |
| Quasirandom Rumor Spreading: An Experimental Analysis | B. Doerr, T. Friedrich, M. Künneman, and T. Sauerwald | Proceedings of the Workshop on Algorithm Engineering and Experiments (ALENEX09), New York, New York, pp. 145-153 | January 2009 | Algorithms | [PDF]
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| Quasirandom Rumor Spreading: Expanders, Push vs. Pull, and Robustness | B. Doerr, T. Friedrich, and T. Sauerwald | Proceedings of the 36th International Colloquium on Automata, Languages, and Programming (ICALP 2009), Rhodes, Greece, pp. 366-377 | July 2009 | Algorithms | [PDF]
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| Emerging Opportunities for Theoretical Computer Science | A.V. Aho, D.S. Johnson, R.M. Karp, S.R. Kosaraju, and others | SIGACT News, Sept. 1997, vol.28, (no.3):65-74. | 1997 | Algorithms | |
| Fast Pruning Using Principal Components | A.U. Levin, T.K. Leen, and J.E. Moody | Advances in Neural Information Processing Systems, Vol. 6, Cowan, Tesauro, and Alspector (eds), Morgan Kaufmann Publishers, San Mateo, California | 1994 | Algorithms | |
| Probabilistic Inference of Viral Quasispecies Subject to Recombination | A. Topfer, O. Zagordi, S. Prabhakaran, V. Roth, E. Halperin, and N. Beerenwinkel | Journal of Computational Biology, Vol. 20, No. 2, pp. 113-123 | February 2013 | Algorithms | |
| Acceleration of DBSCAN-Based Clustering with Reduced Neighborhood Evaluations | A. Thom and O. Kramer | Proceedings of the 33rd Annual German Conference on AI: Advances in Artificial Intelligence (KI 2010), Kralsruhe, Germany, pp. 195-202 | September 2010 | Algorithms | |
| Revealing Modularity and Organization in the Yeast Molecular Network by Integrated Analysis of Highly Heterogeneous Genome-Wide Data | A. Tanay, R. Sharan, M. Kupiec, and R. Shamir | Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 9, pp. 2981-2986. DOI:10.1073/pnas.0308661100. | March 2004 | Algorithms | [PDF]
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| Dynamic Portfolio Management with Transaction Costs | A. Suarez, J. Moody, and M. Saffell | Proceedings of the International Workshop on Advances in Machine Learning for Computational Finance, London, United Kingdom. Also presented at the Multidisciplinary Symposium on Reinforcement Learning, Montreal, Canada, June 2009 | July 2009 | Algorithms | [PDF]
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| On Approximating Optimal Auctions | A. Ronen | The Third ACM Conference on Electronic Commerce (EC01), 11-17, 2001. | 2001 | Algorithms | |
| Decision Technologies for Computational Finance, Proceedings of the London Conference | A. Refenes, N. Burgess, and J. Moody, editors. | Kluwer Financial Publishing, The Netherlands, 1998. | 1998 | Algorithms | |
| Load Balancing in Structured P2P Systems | A. Rao, K. Lakshminarayanan, S. Surana, R.M. Karp, and I. Stoica | Second International Workshop on Peer-to-Peer Systems | 2003 | Algorithms | |
| A Practical Computer Immunology Approach for Self-Protection Enhanced by Optimization Techniques | A. Pietzowski, B. Satzger, W. Trumler, and T. Ungerer | Journal of Autonomic and Trusted Computing | 2010 | Algorithms | |
| Discrete Prediction Games with Arbitrary Feedback and Loss | A. Piccolboni and C. Schindelhauer | Universitat zu Lubeck Technical Report No. AIIM-TR-A-00-18 | November 2000 | Algorithms | |
| Using Contiguous Bi-Clustering for Data Driven Temporal Analysis of fMRI Based Functional Connectivity | A. Maron-Katz, E. B. Simon, Y. Jacob, K. Rosenberg, R. M. Karp, T. Hendler, and R. Shamir | Proceedings of the 4th Annual INCF Neuroinformatics Congress, Boston, Massachusetts | September 2011 | Algorithms | [PDF]
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| Genotype Is a Stronger Determinant than Sex of the Mouse Gut Microbiota | A. Kovacs, N. Ben-Jacob, H. Tayem, E. Halperin, F. A. Iraqi, and U. Gophna | Microbial Ecology, Vol. 61, No. 2, pp. 423-428 | February 2011 | Algorithms | |
| When is the assignment bound tight for the asymmetric traveling-salesman problem? | A. Frieze, R. M. Karp, and B. Reed | SIAM Journal on Computing, Vol. 24, No. 3, pp. 484-93 | June 1995 | Algorithms | |
| Competitive paging algorithms | A. Fiat, R. M. Karp, M. Luby, L.A. McGeoch, D.D. Sleator, and N.E. Young | Journal of Algorithms, Vol. 12, No. 4, pp. 685-99 | December 1991 | Algorithms | |
| Haplotype Reconstruction Using Perfect Phylogeny and Sequence Data | A. Efros and E. Halperin | Proceedings of the Second Annual Satellite Workshop on Massively Parallel Sequencing at the 16th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2012), Barcelona, Spain. Published in BMC Bioinformatics, Vol. 13, Suppl. 6:S2 | April 2012 | Algorithms | [PDF]
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| Adaptive Concept Drift Detection | A. Dries and U. Rueckert | Best paper, proceedings of the 9th SIAM International Conference on Data Mining, Sparks, Nevada, pp. 235-246 | April 2009 | Algorithms | [PDF]
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| Challenges for Theory of Computing | A. Condon, H. Edelsbrunner, E.A. Emerson, L. Fortnow, et.al. | SIGACT News, June 1999, vol.30, (no.2):62-76. | June 1999 | Algorithms | |
| Algorithms for Graph Partitioning on the Planted Partition Model. (Randomization, Approximation, and Combinatorial Optimization. Algorithms and Techniques.) | A. Condon and R.M. Karp | Edited by: Hochbaum, D., Jansen, K., Rolim, J.D.P., Sinclair, A. Berlin, Germany: Springer-Verlag, 1999. pp. 221-32, ix+287 pp. 14 | 1999 | Algorithms | |
| A Heuristic for the Stacker Crane Problem on Trees Which is Almost Surely Exact | A. Coja-Oghlan, S.O. Krumke, and T. Nierhoff | Algorithms and Computation, 14th International Sympsium, ISAAC 2003, LNCS 2906, pp. 605-614, Springer | 2003 | Algorithms | |
