| Approximating the Volume of Unions and Intersections of High-Dimensional Geometric Objects | K. Bringmann and T. Friedrich | Computational Geometry, Vol. 43, Issues 6-7, pp. 601-610 | August 2010 | Algorithms | [PDF]
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| Minimizing Downside Risk via Stochastic Dynamic Programming | J. Moody and M. Saffell | Computational Finance 1999, edited by Y. S. Abu-Mostafa, B. LeBaron, A. W. Lo, and A. S. Weigend, MIT Press, Cambridge, MA, 2000. | 2000 | Algorithms | |
| Term Structure of Interactions of Foreign Exchange Rates | J. Moody and H. Yang | Computational Finance 1999, edited by Y. S. Abu-Mostafa, B. LeBaron, A. W. Lo, and A. S. Weigend, MIT Press, Cambridge, MA, 2000. | 2000 | Algorithms | |
| LogP: A Practical Model of Parallel Computation | D.E. Culler, R.M. Karp, D. Patterson, A. Sahay, and others | Communications of the ACM, Vol. 39, No. 11, pp. 78-85 | November 1996 | Algorithms | |
| Combinatorics, Complexity, and Randomness | R. M. Karp | Communications of the ACM, Vol. 29, No. 2, pp. 98-109 | February 1986 | Algorithms | |
| Increasing the Power of Association Studies by Imputation-Based Sparse Tag SNP Selection | O. Davidovich, G. Kimmel, E. Halperin, and R. M. Shamir | Communications in information and Systems, Vol. 9, No. 3, pp. 269-282 | September 2009 | Algorithms | [PDF]
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| Prediction of Phenotype Information from Genotype Data | N. Yosef, J. Gramm, Q.-F. Wang, W. S. Noble, R. M. Karp, and R. Sharan | Communications in Information and Systems, Vol. 10, No. 2, pp. 99-114 | May 2010 | Algorithms | |
| Graph Traversals, Genes, and Matroids: An Efficient Case of the Travelling Salesman Problem | D. Gusfield, R.M. Karp, W. Lusheng, and P. Stelling | Combinatorial Pattern Matching. 7th Annual Symposium, CPM 96. Proceedings. 10-12 June 1996. Berlin, Germany: Springer-Verlag, 1996. p. 304-19. | June 1996 | Algorithms | |
| Design of the Coronary Artery Disease Genome-Wide Replication and Meta-Analysis (CARDIoGRAM) Study--A Genome-Wide Association Meta-Analysis Involving More than 22,000 Cases and 60,000 Controls | M. Preuss, I. R. Koenig, J. R. Thompson, J. Erdmann, D. Absher, T. L. Assimes, S. Blankenberg, E. Boerwinkle, L. Chen, L. A. Cupples, A. S. Hall, E. Halperin, et al. | Circulation: Cardiovascular Genetics, Vol. 3, pp. 475-483 | October 2010 | Algorithms | |
| Associative Memories | J. Moody | Chapter II 5, DARPA Neural Network Study Final Report, Richard Lippmann, ed. | 1988 | Algorithms | |
| High Frequency Foreign Exchange Rates: Price Behavior Analysis and `True Price' Models | J. Moody and L. Wu | Chapter 2 of Nonlinear Modelling of High Frequency Financial Data, Christian Dunis and Bin Zhou, editors, Wiley Financial Publishing, London, 1998. | 1998 | Algorithms | |
| Combinatorial Games with a Pass: A dynamical systems approach | R. Morrison, E. Friedman, and A. Landsberg | Chaos, Vol. 21, No. 4 | December 2011 | Algorithms | |
| Inhibition of Activated Pericentromeric SINE/Alu Repeat Transcription in Senescent Human Adult Stem Cells Reinstates Self-Renewal | J. Wang, G. J. Geesman, S. L. Hostikka, M. Atallah, B. Blackwell, E. Lee, P. J. Cook, B. Pasaniuc, G. Shariat, E. Halperin, M. Dobke, M. G. Rosenfeld, I. K. Jordan, and V. V. Lunyak | Cell Cycle, Vol. 10, No.17, pp. 3016-3030 | September 2011 | Algorithms | |
| Probabilistic Behavior of a Naive Coloring Algorithm on Random Graphs | R. M. Karp and D.W. Matula | Bulletin of the Operations Research Society of America, Vol. 23, supplement 2. Also in the proceedings of the ORSA/TIMS National Meeting (Abstracts only), Las Vegas, Nevada, pp. B264 | 1975 | Algorithms | |
| Towards the Integrated Analysis, Visualization, and Reconstruction of Microbial Gene Regulatory Networks | J. Baumbach, S. Rahmann, and A. Tauch | Briefings in Bioinformatics, Vol. 10, Issue 1, pp. 75-83 | January 2009 | Algorithms | [PDF]
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| Reliable Transfer of Transcriptional Gene Regulatory Networks Between Taxonomically Related Organisms | J. Baumbach, S. Rahmann, and A. Tauch | BMC Systems Biology, Vol. 3, Issue 8 | January 2009 | Algorithms | [PDF]
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| Genotyping Common and Rare Variation Using Overlapping Pool Sequencing | D. He, N. Zaitlen, B. Pasaniuc, E. Eskin, and E. Halperin | BMC Informatics, Vol. 12, Suppl. 6. Also appears in the proceedings of the First Annual RECOMB Satellite Workshop on Massively Parallel Sequencing (RECOMB-seq), Vancouver, Canada, pp. 26-27 | March 2011 | Algorithms | [PDF]
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| Common Variation at 6p21.31 (BAK1) Influences the Risk of Chronic Lymphocytic Leukemia | S. L. Slager, C. F. Skibola,..., E. Halperin, et al. | Blood, Vol. 120, No. 4, pp. 843-846 | July 2012 | Algorithms | |
| Internal Representations for Associative Memory | E.B. Baum, J. Moody, and F. Wilczek | Biological Cybernetics, Vol. 59, pp. 217-228 | 1988 | Algorithms | |
| Fast and Accurate Inference of Local Ancestry in Latino Populations | Y. Baran, B. Pasaniuc, S. Sankararaman, D. G. Torgerson, C. Gignoux, C. Eng, W. Rodriguez-Cintron, R. Chapela, J. G. Ford, P. C. Avila, J. Rodriguez-Santana, E. G. Burchard, and E. Halperin | Bioinformatics, Vol. 28, Issue 10, pp. 1359-1367 | May 2012 | Algorithms | [PDF]
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| miRNAkey: A Software for microRNA Deep Sequencing Analysis | R. Ronen, I. Gan, S. Modai, A. Sukacheov, G. Dror, E. Halperin, and N. Shomron | Bioinformatics, Vol. 26, Issue 20, pp. 2615-2616 | October 2010 | Algorithms | |
| HAPLOPOOL: Improving Haplotype Frequency Estimation Through DNA Pools and Phylogenetic Modeling | B. Kirkpatrick, C. Santos Armendariz, R. M. Karp, and E. Halperin | Bioinformatics, Vol. 23, No. 22, pp. 3048-3055 | November 2007 | Algorithms | [PDF]
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| Scoring Clustering Solutions by Their Biological Relevance | I. Gat-Viks, R. Sharan, and R. Shamir | Bioinformatics, 19,pp 2381-2389 | 2003 | Algorithms | |
| CLICK and EXPANDER: A System for Clustering and Visualizing Gene Expression Data | R. Sharan, A. Maron-Katz, and R. Shamir | Bioinformatics, 19, pp. 1787-1799 | 2003 | Algorithms | |
| Haplotype Reconstruction from Genotype Data Using Imperfect Phylogeny | E. Halperin and E. Eskin | Bioinformatics | January 05 2004 | Algorithms | |
| Adaptive Concept Drift Detection | A. Dries and U. Rueckert | Best paper, proceedings of the 9th SIAM International Conference on Data Mining, Sparks, Nevada, pp. 235-246 | April 2009 | Algorithms | [PDF]
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| Recent Advances in the Probabilistic Analysis of Graph-theoretic Algorithms | R. M. Karp, Edited by: Maurer, H.A. | Automata, Languages and Programming, Graz, Austria, Springer-Verlag, pp. 338-9 | July 1979 | Algorithms | |
| Novel Associations for Coronary Artery Disease Derived from Genome Wide Association Studies Are Not Associated with Increased Carotid Intima-Media Thickness.... | L. Conde, S. Bevan, M. Sitzer, N. Klopp, T. Illig, J. Thiery, J. Seissler, J. Baumert, O. Raitakari, M. Khnen, L. P. Lyytikinen, R. Laaksonen, J. Viikari, T. Lehtimki, W. Koernig, E. Halperin, H. S. Markus | Atherosclerosis, Vol. 219, No 2, pp. 684-689 | December 2011 | Algorithms | |
| Filamentary Galaxy Clustering: A Mapping Algorithm | J. Moody, E.L. Turner, and J.R. Gott III | Astrophysical Journal, Vol. 273, pp. 16-23 | October 1983 | Algorithms | |
| Faster and More Accurate Sequence Alignment with SNAP | M. Zaharia, W. J. Bolosky, K. Curtis, A. Fox, D. Patterson, S. Shenker, I. Stoica, R. M. Karp, and T. Sittler | arXiv.org under arXiv:1111.5572v1 | November 2011 | Algorithms | [PDF]
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| Searching for an optimal path in a tree with random costs | R. M. Karp and J. Pearl | Artificial Intelligence, Vol. 21, No.1-2, pp. 99-116 | March 1983 | Algorithms | |
| LAMP: Local Ancestry in adMixed Populations | S. Sankararaman, S. Sridhar, G. Kimmel, and E. Halperin | American Journal of Human Genetics, Vol. 82, Issue 2, American Society of Human Genetics, pp. 290-303 | February 2008 | Algorithms | |
| A Randomization Test for Controlling Population Stratification in Whole-Genome Association Studies | G. Kimmel, M. I. Jordan, E. Halperin, R. Shamir, and R. M. Karp | American Journal of Human Genetics, Vol. 81, Issue 5, pp. 895-905 | November 2007 | Algorithms | [PDF]
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| Leveraging the HapMap Correlation Structure in Association Studies | N. Zaitlen, H. M. Kang, E. Eskin, and E. Halperin | American Journal of Human Genetics, Vol. 80, Issue 4, pp. 683-691 | April 2007 | Algorithms | [PDF]
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| A Comparison of Phasing Algorithms for Trios and Unrelated Individuals | J. Marchini, D. Cutler, N. Patterson, M. Stephens, E. Eskin, E. Halperin, S. Lin, S. Qin, G. Abecassis, H. Munro, and P. Donnelly | American Journal of Human Genetics, Vol. 78, Issue 3, pp. 437-450 | March 2006 | Algorithms | |
| A Heuristic for the Stacker Crane Problem on Trees Which is Almost Surely Exact | A. Coja-Oghlan, S.O. Krumke, and T. Nierhoff | Algorithms and Computation, 14th International Sympsium, ISAAC 2003, LNCS 2906, pp. 605-614, Springer | 2003 | Algorithms | |
| Error-Resilient DNA Computation. Random Structures & Algorithms, Random Struct | R.M. Karp, C. Kenyon, and O. Waarts | Algorithms (USA), vol.15, (no.3-4), Wiley, Oct.-Dec. 1999. p.450-66. 19 | October 1999 | Algorithms | |
| FFD bin packing for item sizes with uniform distributions on (0, 1/2) | S. Floyd and R. M. Karp | Algorithmica, Vol. 6, No. 2, pp. 222-40 | 1991 | Algorithms | |
| On Mixing and Edge Expansion Properties in Randomized Broadcasting | T. Sauerwald | Algorithmica, Vol. 56, No. 1, pp. 51-88 | January 2010 | Algorithms | |
| Global wire routing in two-dimensional arrays | R. M. Karp, F.T. Leighton, R.L. Rivest, C.D. Thompson, U.V. Vazirani, and V.V. Vazirani | Algorithmica, Vol. 2, No.1, pp. 113-29 | 1987 | Algorithms | |
| A Method for Obtaining Randomized Algorithms with Small Tail Probabilities | H. Alt, L. Guibas, K. Mehlhorn, R. M. Karp, et al. | Algorithmica, Vol. 16, No. 4-5, pp. 543-547 | October 1996 | Algorithms | |
| Efficient PRAM Simulation on a Distributed Memory Machine | R.M. Karp, M. Luby, and F. Meyer auf der Heide | Algorithmica, Vol. 16, No. 4-5, pp. 517-42 | October 1996 | Algorithms | |
| Coding techniques for handling failures in large disk arrays | L. Hellerstein, G.A. Gibson, R. M. Karp, R.M. Katz, and D.A. Patterson | Algorithmica, Vol. 12, No. 2-3, pp. 182-208 | August 1994 | Algorithms | |
| On the power of randomization in on-line algorithms | S. Ben-David, A. Borodin, R. M. Karp, G. Tardos, and A. Wigderson | Algorithmica, Vol. 11, No. 1, pp. 2-14 | January 1994 | Algorithms | |
| Mapping Clones with a Given Ordering or Interleaving | T. Jiang and R.M. Karp | Algorithmica, July 1998, vol.21, (no.3):262-84. | 1998 | Algorithms | |
| Automated Generation of Search Tree Algorithms for Hard Graph-Modification Problems | J. Gramm, J. Guo, F. Hüffner, and R. Niedermeier | Algorithmica, 39(4):321-347 | January 05 2004 | Algorithms | |
| Data Visualization and Feature Selection: New Algorithms for Nongaussian Data | H. Yang and J. Moody | Advances in Neural Information Processing Systems, Vol.12, S.A. Solla, T.K. Leen and K.R. Muller (eds.), MIT Press, 2000. | 2000 | Algorithms | |
| Constructing Heterogeneous Committees via Input Feature Grouping | Y. Liao and J. Moody | Advances in Neural Information Processing Systems, Vol.12, S.A. Solla, T.K. Leen and K.-R. Muller (eds.),MIT Press, 2000. | 2000 | Algorithms | |
| Fast Pruning Using Principal Components | A.U. Levin, T.K. Leen, and J.E. Moody | Advances in Neural Information Processing Systems, Vol. 6, Cowan, Tesauro, and Alspector (eds), Morgan Kaufmann Publishers, San Mateo, California | 1994 | Algorithms | |
| Networks with Learned Unit Response Functions | J. Moody and N. Yarvin | Advances in Neural Information Processing Systems, Vol. 4, Moody, Hanson, and Lippmann, eds., Morgan Kaufmann, Palo Alto, pp. 1048-1055 | 1992 | Algorithms | |
