| Understanding Science Through the Lens of Computation | R. Karp | Presented at the Symposium on Transformational Information Engineering and Science, Singapore | January 2010 | Algorithms | |
| Universal DNA Tag Systems: A Combinatorial Design Scheme | A. Ben-Dor, R. Karp, B. Schwikowski, and Z. Yakhini | Proceedings of RECOMB 2000. | 2000 | Algorithms | |
| Using Contiguous Bi-Clustering for Data Driven Temporal Analysis of fMRI Based Functional Connectivity | A. Maron-Katz, E. B. Simon, Y. Jacob, K. Rosenberg, R. M. Karp, T. Hendler, and R. Shamir | Proceedings of the 4th Annual INCF Neuroinformatics Congress, Boston, Massachusetts | September 2011 | Algorithms | [PDF]
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| Using DNA Pools for Genotyping Trios | K.B. Beckman, K.A. Abel, A. Braun, and E. Halperin | Nucleic Acids Research, Vol. 34, No. 19, electronic article no. 129 | November 2006 | Algorithms | [PDF]
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| Using Markov-Chain Mixing Time Estimates for the Analysis of Ant Colony Optimization | D. Sudholt | Proceedings of the 11th Foundations of Genetic Algorithms Workshop (FOGA XI), pp. 139-150, Schwarzenberg, Austria | January 2011 | Algorithms | [PDF]
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| Variations on the Theme of "Twenty Questions" | R.M. Karp | Proceedings of the 1998 IEEE International Symposium on Information Theory, Aug. 1998. New York, NY, USA: IEEE, 1998. p. 3. | August 1998 | Algorithms | |
| Weight-Space Probability Densities and Equilibria in Stochastic Learning | T.K. Leen and J. Moody | Advances in Neural Information Processing Systems 5, Hanson, Cowan, and Giles (eds), Morgan Kaufmann Publishers, San Mateo, California | 1993 | Algorithms | |
| What is the True Price? -- State Space Models for High Frequency FX Rates | J. Moody and L. Wu | Decision Technologies for Financial Engineering, Y. Abu-Mostafa, A. N. Refenes, and A. S. Weigend, eds., World Scientific, London, 1997. | 1997 | Algorithms | |
| When is the assignment bound tight for the asymmetric traveling-salesman problem? | A. Frieze, R. M. Karp, and B. Reed | SIAM Journal on Computing, Vol. 24, No. 3, pp. 484-93 | June 1995 | Algorithms | |
| When to Use Bit-Wise Neutrality | T. Friedrich and F. Neumann | Natural Computing, Vol. 9, No. 1, pp. 283-294 | March 2010 | Algorithms | [PDF]
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| Whole-Genome Patterns of Common DNA Variation in Three Human Populations | D. A. Hinds, L. L. Stuve, G. B. Nilsen, E. Halperin, E. Eskin, D. G. Ballinger, K. A. Frazer, and D. R. Cox | Science, Vol. 307, No. 5712, pp. 1072-1079. DOI:10.1126/science.1105436 | February 2005 | Algorithms | [PDF]
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