Publications
Using Contiguous Bi-Clustering for Data Driven Temporal Analysis of fMRI Based Functional Connectivity.
Proceedings of the 4th Annual INCF Neuroinformatics Congress.
(2011). Torque: Topology-Free Querying of Protein Interaction Networks.
Journal of Computational Biology. 17(3), 237-252.
(2010).
(2009). Torque: Topology-Free Querying of Protein Interaction Networks.
Nucleic Acids Research. 37, 106-108.
(2009). Topology-Free Querying of Protein Interaction Networks.
Journal of Computational Biology. 17(3), 237-252.
(2010). Tag SNP Selection in Genotype Data for Maximizing SNP Prediction Accuracy.
Proceedings of the 13th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2005). 195-203.
(2005). A Simplex variant solving an m*d linear program in O(min(m2, d2)) expected number of pivot steps.
Journal of Complexity. 3(4), 372-387.
(1987). Scoring Clustering Solutions by Their Biological Relevance.
Bioinformatics. 2381-2389.
(2003). Revealing Modularity and Organization in the Yeast Molecular Network by Integrated Analysis of Highly Heterogeneous Genome-Wide Data.
Proceedings of the National Academy of Sciences of the United States of America. 101(9), 2981-2986.
(2004). The Restriction Scaffold Problem.
Proceedings of the Sixth Annual International Conference on Research in Computational Molecular Biology (RECOMB'02).
(2002). The Restriction Scaffold Problem.
Journal of Computational Biology. 10(3-4), 385-398.
(2003). Reconstructing Chain Functions in Genetic Networks.
Proceedings of the Ninth Pacific Symposium on Biocomputing (PSB'04). 498-509.
(2004). A Randomization Test for Controlling Population Stratification in Whole-Genome Association Studies.
American Journal of Human Genetics. 81(5), 895-905.
(2007).
(2004).
Increasing the Power of Association Studies by Imputation-Based Sparse Tag SNP Selection.
Communications in Information and Systems. 9(3), 269-282.
(2009). Incomplete Directed Perfect Phylogeny.
SIAM Journal on Computing. 33(3), 590-607.
(2004). Idetifying Blocks and Sub-Populations in Noisy SNP Data.
Proceedings of the Third Workshop on Algorithms in Bioinformatics (WABI'03). 303-319.
(2003). Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data.
Proceedings of the 8th Annual International Conference on Research in Computational Molecular Biology (RECOMB'04). 282-289.
(2004).
(2003). Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data.
Journal of Computational Biology. 12(6), 835-846.
(2005). Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data.
Proceedings of RECOMB 2004. 282-289.
(2004). Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data.
Proceedings of the 8th Annual International Conference on Research in Computational Molecular Biology (RECOMB'04). 282-289.
(2004).
(2003).